Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49060 705 / 0 U-box domain-containing protein kinase family protein (.1.2) AT2G45910 644 / 0 U-box domain-containing protein kinase family protein (.1) AT5G51270 342 / 3e-105 U-box domain-containing protein kinase family protein (.1) AT4G25160 333 / 5e-102 U-box domain-containing protein kinase family protein (.1) AT5G57035 329 / 7e-101 U-box domain-containing protein kinase family protein (.1) AT5G61550 323 / 6e-98 U-box domain-containing protein kinase family protein (.1.2) AT5G61560 321 / 1e-97 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 304 / 3e-91 U-box domain-containing protein kinase family protein (.1) AT3G20200 261 / 1e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 258 / 9e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 696 / 0 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 526 / 8e-175 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 436 / 6e-142 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 437 / 3e-141 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 424 / 3e-137 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 318 / 3e-96 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 301 / 1e-90 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G225300 [exp] 268 / 3e-78 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 266 / 1e-77 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039245 [exp] 796 / 0 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10027490 [exp] 764 / 0 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 524 / 1e-173 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 519 / 6e-172 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10040825 [exp] 436 / 8e-141 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 429 / 1e-139 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 431 / 7e-139 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 358 / 1e-111 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 358 / 2e-111 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10020185 [exp] 263 / 2e-78 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.012G143100.1 pacid=42783541 polypeptide=Potri.012G143100.1.p locus=Potri.012G143100 ID=Potri.012G143100.1.v4.1 annot-version=v4.1 ATGGAGGGTGTTGATGGGCTCGAGGCAGAGAGAGTGTTTCATTTGGAGGAGACTATATTTGTTGCAGTTGGCAAGAATGTAGATAAGAGTAAAAGATTGC TTTTTTGGGTATTACAGAGTTTTGCAGGCAAGAAGATATGTCTCCTCTATGTTCACCGGCCTGCAAATGTTGTGTCTTTCACACACAGAAAACTTGCTGT CAATAAACTAAAGGAAGATGCTGTCAAGGCATTCCAAGAACTTGAAACGAAAAAGATGCATGATGTCTTGGATCAATACCGTCTCATTCTTGCTCAAGAG GGGGTAGAAGCAGACAAAGTATGGATCAAGATGGACGATATAGCTAAGGGAATTGTTGAGGTTATTGCTCAATACAACATTAGGTGGCTTGTCATGGGAG CAGCAGCTGATAAATACTATTCAAAGAAACTGGGAGAAATAAAGTCCAAGAAAGCAATAATTGTGTGCCAGCAAGCACCAACTTCCTGCCATATCTGGTT TGTTTGCAGAGGCTCTCTTATCTACACAAGGGAAGGTAGAGATTATGGATCCGAAACAGAGATTTCTCTTCCATTGCTACTGCTGAGTTCAGATTCAGAT ACTGAGCAATTGAGACTCTTGAGATCAGAGTCTCTTACACAACTAGATAGATCTCTCGATGCAGAGGAAGTTGCTGGTGACTTGGAAGGAATATTGGGAA GATTTGATTATTATCCTGTTCATTCTTGTCAATCAACCAACATAATACTCAGCACTTCCAAATTGATTCCATTGTTGGCAGATGAGGAAGAAAAAACTCA GACGCAAACAACTGAAGAAACATGTTCTAGATTGGAACAAGCAATTATGGATACTAAGGACTCAAAGCAAAAGGCTCTTGTGGAGGCAGTAAAGCGATGG AAAGAGGAAGACAATGTTATGGAGGCCAAATGCAAGGCCATAGCATTAGAAAACTTATGCATTAAGGAGATTAGCCTAAGAAAAGAAATGGAGGAAGCCT TGAATAGAAGAAAGCAAGAAGTGGAAAAGAAAAAGAATCAGCGTGATGAATTTTTAAAAGAACTCCAGATGGTCCAGGAGCACAAGTTTGCACTTGAGAG CCAAATTGCAGAGTCCCAGAATACAGTGGAGGAGTTGGAGCAGAAGATCATCTCAGCTGTGCAACTCCTGATAAGTTTTAAGGAAAGGCGGGATGCAGCA ATGGTGGAGTATGAAAATGCAAGACAGGAAGTTAGAAGGCTAAAAAGATCAGCTATAGCAGCAGCTGCAGGCAGCAAGTCAGAAATCCTTGAATTCTCTT TTATGGAAATCAATGAAGCAACTCACTATTTTGATCCATCCTGGAAGATCAGTGAAGGAAAATATGGAAGTGTCTACAAAGGGCTCCTTCGCCATCTCCT TGTTGCCATCAAGATGTTTCCATCTTACAGCTCTCAAAGCCTCTTGGACTTTCAAAATGGGGTAGAGATTTTTAGTAGAGTGAGGCACCCAAACCTTGTA ATGCTAGTTGGAACCTGTCCAGAGTCTAGGTCGCTTGTCTACGAGTATGTCCGAAATGGAAGCCTTGAAGATAACCTTTTCTGCAAAGACAAGATGCCTC CGCTTCCATGGCAAACTCGGATACGCATTGCTGTCCAGATATGCTCTTCCCTTGTCTTCCTACACTCTAACAAGCCTTGTATCATACATGGGAATTTAAA ACCATCCAAGGTCCTCCTTGATGCTAACTTTGTCAGTAAACTTACTGACTTTGGCGTGTTTTATTTGATCCCACAAAGTGAAAGCGGTTCAAACTTAACT GGAATTTGTAATAAATCCAACCCCAATTTCACCTCTTTATATATTGATCCAGAATATCTTGAGACCGGGATGCTTACTCCAGAGTCAGATGTGTACTCTT TTGGAATTATACTGTTACAGCTTTTGACTGGGAGAGCTGGTTTGGACATATTGAAAGAAGTAAAATGTGCAATAGAAAAAGATAATTTCAAAGCACTGCT GGACTGTTCTGGTGGGAATTGGCCATTTGAGGAAGCCGAACAGTTAGCTAACTTGGCCTTGAGGTGCTGTGAAAAGAACCGACTTGACAGGCCAGATCTT GTGTTAATCTTGAGAGTGCTTGAGCCAATGAAGACTTCAGGAATTGATTCAGGACCCAAGGAGCCAAGTCGGATTCCATCTCATTTTGTCTGTCCTATTC TTCAGGAAGTCATGGATGATCCACAGATTGCCGCAGATGGTTTTACATATGAAGCAGAGGCTATTAGAGGATGGCTGAAGAGCGGGCACAACACTTCACC AATGACAAATCTTAAACTTGAGCACTGTAATCTACTCCCTAACCATGCTCTTCATCAAGCGATTCTTGAGTGGCGTCAGCATTTGTGA
AA sequence Show only first row Show all	>Potri.012G143100.1 pacid=42783541 polypeptide=Potri.012G143100.1.p locus=Potri.012G143100 ID=Potri.012G143100.1.v4.1 annot-version=v4.1 MEGVDGLEAERVFHLEETIFVAVGKNVDKSKRLLFWVLQSFAGKKICLLYVHRPANVVSFTHRKLAVNKLKEDAVKAFQELETKKMHDVLDQYRLILAQE GVEADKVWIKMDDIAKGIVEVIAQYNIRWLVMGAAADKYYSKKLGEIKSKKAIIVCQQAPTSCHIWFVCRGSLIYTREGRDYGSETEISLPLLLLSSDSD TEQLRLLRSESLTQLDRSLDAEEVAGDLEGILGRFDYYPVHSCQSTNIILSTSKLIPLLADEEEKTQTQTTEETCSRLEQAIMDTKDSKQKALVEAVKRW KEEDNVMEAKCKAIALENLCIKEISLRKEMEEALNRRKQEVEKKKNQRDEFLKELQMVQEHKFALESQIAESQNTVEELEQKIISAVQLLISFKERRDAA MVEYENARQEVRRLKRSAIAAAAGSKSEILEFSFMEINEATHYFDPSWKISEGKYGSVYKGLLRHLLVAIKMFPSYSSQSLLDFQNGVEIFSRVRHPNLV MLVGTCPESRSLVYEYVRNGSLEDNLFCKDKMPPLPWQTRIRIAVQICSSLVFLHSNKPCIIHGNLKPSKVLLDANFVSKLTDFGVFYLIPQSESGSNLT GICNKSNPNFTSLYIDPEYLETGMLTPESDVYSFGIILLQLLTGRAGLDILKEVKCAIEKDNFKALLDCSGGNWPFEEAEQLANLALRCCEKNRLDRPDL VLILRVLEPMKTSGIDSGPKEPSRIPSHFVCPILQEVMDDPQIAADGFTYEAEAIRGWLKSGHNTSPMTNLKLEHCNLLPNHALHQAILEWRQHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49060			U-box domain-containing protei...		Potri.012G143100 [exp]	0	1
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	7.21	0.8194
AT5G43150			unknown protein		Potri.001G037400 [exp]	8.00	0.8047
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.006G052700 [exp]	9.48	0.8230
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Potri.001G025601 [exp]	10.39	0.8067
AT3G53690			RING/U-box superfamily protein...		Potri.013G120300 [exp]	13.41	0.7829
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.013G028200 [exp]	13.74	0.7559
AT2G46550			unknown protein		Potri.005G071400 [exp]	15.49	0.8189
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Potri.008G201500 [exp]	15.96	0.7051	RNR2.1
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	16.58	0.7869
AT5G12950			Putative glycosyl hydrolase of...		Potri.001G018200 [exp]	17.49	0.8039

Compare expression of checked genes

Potri.012G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.