Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25610 399 / 3e-131 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146300 [exp] 1045 / 0 AT4G25610 386 / 6e-126 C2H2-like zinc finger protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027491 [exp] 509 / 6e-173 AT4G25610 446 / 2e-149 C2H2-like zinc finger protein (.1.2) Lus10039246 [exp] 494 / 1e-166 AT4G25610 425 / 4e-141 C2H2-like zinc finger protein (.1.2) Lus10014974 [exp] 452 / 1e-151 AT4G25610 426 / 6e-143 C2H2-like zinc finger protein (.1.2) Lus10038856 [exp] 426 / 9e-142 AT4G25610 392 / 4e-130 C2H2-like zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G143200.4 pacid=42782901 polypeptide=Potri.012G143200.4.p locus=Potri.012G143200 ID=Potri.012G143200.4.v4.1 annot-version=v4.1 ATGCCAGTTGTGAAACCTGTGAGCAGTATTATTGATGTGATGAGACCGGCTGAGGGGAATGAATCTTCCCTAGATACATTCATCAGGGATGCCATTGGAA AACAGCCGCTTCTTTCTATTTCAAGGCCGAATGATAACCCTGTTCAGTGGATCCAATTACTCCATGCTCTCGATCAGCCAGATTACCCAGGTTGGCCTTT GCTCACTCCTTTGAAGGCGCAGATGCAAAAGTGCAGCAAGTGTTCCCGAGAATTTTGTTCTTCCATTAACTATAGAAGACACTTGCGGGTTCATCATCGA TTGAAAAGACTTGATAAGGATTCTGCCAAAAATAGGGACTTGTTAGGAGCATTTTGGGATAAGCTCTCTGAGGATGAGGCAAAGGAAATCTTATCATTCA AGGACGTGACTTTTGAGGAAGTTCCAGGGTCTTCAATTATAAGGTCATTGATGACGGTTATTCGGAAACCAGGGATCTCTTCACTTACTCAATCTTGTTG GAGAGCTGGTTCTGACCTTTTGGATCTTGTCCAGGGGAGGCCCTCCAGGTTTCCTTTGTCTTCTGGGCAACTCTTCAGTACTCTTGATGATGCAAGTGAA AATACGTTTTTATGTGGAACAGCTGTATTAATACAAAAATATATTTTTGATGGAGGAGCTGGGAAGATAGGGCTTGAAACAAAGAACATAGTTGCTTGCA CAAGCTTTGTGGTGGAACAGAAATTGATTAACGCATGGCTTGCAGACCAGGATGCAGAAGCTTTGAGGTGCCAAAAGTTGCTCGTGGAGGAGGAGGAAGC TGCACAAAGAAGGCAAGTTGAACTCCTGGAAAGGAAGAGGCAGAAAAAACTGAGGCTCAAAGAACAGAAAGAGAAGGAGCAAAGGCTAGATGATAAGGTT GATGATAAGGAGTGTATTGAGGACACACTGGAGGCTGTGCCTCAAGCTGAACAATCCTGTCCTTTGGCTATATCTGATTCTGATACGCTTGGTTCAGAGA TTCTGCCAGATGATGTTCCCTCATCTCTTGAACCCTTACAACTACCAAGAACAGATGAAGATTTTGATTTGGAAAATCAGATGGGATGCGGTGGTGGACG GTCAATGTTACAAGGAAAGAGTCATATGCATATTGTTGTTGCTCGATGGCATGGTCCTTTAAAATCACAGCGGAATCATCTGTCATATGGTTTCCATGCT AATCAAAATTCTCACGCCCCAAAACCTGGCACCATACAGAAGCATGGAAATCTAAGGGATTTTAAGCCTGGACCTGTAATGAATGGCAACAGAAAATGGA GCCGAAAACCTAAACCAGAATATAATGGGGAGAGTTTGAAAGCTAGAGTGCAAAAGGAAGTAGTAACCGTACTGGATCATGATAAGAAGGGGGAGGTTCT GATTGGTTCTATATCTGTCACCCTTGGAGATTGTAGCCATGATGAAGGTAACAATTTGGATGGAGCCCGAGCTGATTACCTGGTAGAGCATGAAATTCTA AAGAAGAAAAATGTGCAGGAGAAGCACAACAGACCTGATTCAGTTCAATGTGGCACAAATCGTTCAACAGTAAAGCTTTGGAGGCCTGTTAGTCGGAATG GATCGAAAGATCTAATGCTAGTTGAAAATGGCAGTAGAGAATGCCAACACGACAACATTGATGGGAAGGGTGAGGATCAGAACTTCAATGACAGCTCTCC AAGATCATGTGCCATGGACAATACTTTTGGTGGGATGGAAAATGGTTCTCTACCTGGAGGGCTTCTTCCAGGAGTCTTGCAGTTTACAAGCCATGAAGCA AGGGCTTTTCTTGCAGAGAGGTGGAAGGAGGCCATTGCTGCTGAACATGTGAAATTGGCTCTATCCCCAGACTATCAAATTGCTACAAATCATTCATCGG ATACAAGTAAGCACAACGATATCAGCAGTGCAGAAAATCAGTTGTTTAATGTGGAGGCACAGGAGTCTTCAACTTCTGGAGCTGGTAGAGCCAAGTATAA AACAAAGCCTGATAATGGTGTCAAGTTAAAGTATATACCGAAACAAAGAACGATCATTTAA
AA sequence Show only first row Show all	>Potri.012G143200.4 pacid=42782901 polypeptide=Potri.012G143200.4.p locus=Potri.012G143200 ID=Potri.012G143200.4.v4.1 annot-version=v4.1 MPVVKPVSSIIDVMRPAEGNESSLDTFIRDAIGKQPLLSISRPNDNPVQWIQLLHALDQPDYPGWPLLTPLKAQMQKCSKCSREFCSSINYRRHLRVHHR LKRLDKDSAKNRDLLGAFWDKLSEDEAKEILSFKDVTFEEVPGSSIIRSLMTVIRKPGISSLTQSCWRAGSDLLDLVQGRPSRFPLSSGQLFSTLDDASE NTFLCGTAVLIQKYIFDGGAGKIGLETKNIVACTSFVVEQKLINAWLADQDAEALRCQKLLVEEEEAAQRRQVELLERKRQKKLRLKEQKEKEQRLDDKV DDKECIEDTLEAVPQAEQSCPLAISDSDTLGSEILPDDVPSSLEPLQLPRTDEDFDLENQMGCGGGRSMLQGKSHMHIVVARWHGPLKSQRNHLSYGFHA NQNSHAPKPGTIQKHGNLRDFKPGPVMNGNRKWSRKPKPEYNGESLKARVQKEVVTVLDHDKKGEVLIGSISVTLGDCSHDEGNNLDGARADYLVEHEIL KKKNVQEKHNRPDSVQCGTNRSTVKLWRPVSRNGSKDLMLVENGSRECQHDNIDGKGEDQNFNDSSPRSCAMDNTFGGMENGSLPGGLLPGVLQFTSHEA RAFLAERWKEAIAAEHVKLALSPDYQIATNHSSDTSKHNDISSAENQLFNVEAQESSTSGAGRAKYKTKPDNGVKLKYIPKQRTII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	0	1
AT3G22430			unknown protein		Potri.009G147201 [exp]	3.87	0.6803
AT1G61210		DWA3	DWD hypersensitive to ABA 3, T...		Potri.011G045500 [exp]	4.24	0.6736
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Potri.016G083100 [exp]	7.34	0.6762
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	10.48	0.6973
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	11.95	0.6677
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G109600 [exp]	13.26	0.6738
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	19.59	0.6642
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.006G000700 [exp]	19.79	0.6760
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	20.24	0.6776
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G197500 [exp]	20.34	0.6590

Compare expression of checked genes

Potri.012G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.