Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52420 126 / 3e-36 unknown protein AT5G23920 100 / 2e-26 unknown protein AT1G27990 62 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146400 [exp] 291 / 4e-101 AT5G52420 259 / 3e-87 unknown protein Potri.003G168400 [exp] 69 / 5e-14 AT1G27990 318 / 5e-109 unknown protein Potri.001G059500 [exp] 67 / 2e-13 AT1G27990 308 / 7e-106 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039248 [exp] 133 / 1e-38 AT5G52420 212 / 8e-69 unknown protein Lus10039249 [exp] 100 / 4e-26 AT5G52420 160 / 2e-49 unknown protein Lus10027495 [exp] 99 / 1e-25 AT5G52420 159 / 8e-49 unknown protein Lus10015763 [exp] 71 / 8e-15 AT1G27990 302 / 5e-104 unknown protein Lus10037043 [exp] 69 / 3e-14 AT1G27990 306 / 2e-105 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G143300.1 pacid=42783699 polypeptide=Potri.012G143351.1.p locus=Potri.012G143300 ID=Potri.012G143300.1.v4.1 annot-version=v4.1 ATGTCAGGTGGTGTTGGCCCTTCATGTAGTGACATAAGCCTTCCAAATGAAAGAGAACAAGAACAGAAACTCCAAGAAGACCTGTCTTCGTTGAAAAACC CTAAAAGCACTACCTCTTCAAAGAAAGCTGTTGCATTCCCCACCACTATCAACCCTCCAAGAGAGTCTCTAGTTTTTTACCCAAAAACCAAGATTCTCGG CCTATACGTGTTTGTTGGTGCTATTGTTGGACTCTTTCTCCCCCTAGCTTACATCTTTGAAGGCATTTTCGAGGGAGATAAAGAAGGAATCAAAGCTGCA GCACCAGCAGCTCAGGTTTTCATGGAAGGAGTGGCATTTTCAGATAGGTTTTCGATCCCAATACGTGTTTTTGTGCCTGTGTTTTGTAATTCAAGGAGGA TTTTCACACTTGTGGATTGGTTGAGGAATGAGATCACAAAGGTGGAGCAGGATTACGGAGAATCTACTAGGAGGCTCCACATTGGTAGAGCTCTTGCTGT GGCTAACCTGGCCTTTTGGTGCTTGTTTGCATCCCTGGAGCCTTCAAGAAGTACTACACTGGATTGA
AA sequence Show only first row Show all	>Potri.012G143300.1 pacid=42783699 polypeptide=Potri.012G143351.1.p locus=Potri.012G143300 ID=Potri.012G143300.1.v4.1 annot-version=v4.1 MSGGVGPSCSDISLPNEREQEQKLQEDLSSLKNPKSTTSSKKAVAFPTTINPPRESLVFYPKTKILGLYVFVGAIVGLFLPLAYIFEGIFEGDKEGIKAA APAAQVFMEGVAFSDRFSIPIRVFVPVFCNSRRIFTLVDWLRNEITKVEQDYGESTRRLHIGRALAVANLAFWCLFASLEPSRSTTLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52420			unknown protein		Potri.012G143300 [exp]	0	1
AT1G26761			Arabinanase/levansucrase/inver...		Potri.008G089800 [exp]	3.46	0.9710
AT5G08050			Protein of unknown function (D...		Potri.015G058600 [exp]	14.24	0.9512
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Potri.001G184000 [exp]	15.09	0.9596
AT2G46735			unknown protein		Potri.002G178100 [exp]	18.76	0.9493
AT5G61040			unknown protein		Potri.008G096100 [exp]	20.00	0.9483
AT1G27480			alpha/beta-Hydrolases superfam...		Potri.014G014400 [exp]	20.14	0.9444	Pt-LCAT1.2
AT5G20935			unknown protein		Potri.009G155300 [exp]	20.59	0.9541
					Potri.014G124700 [exp]	20.73	0.9306
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.008G181900 [exp]	22.18	0.9517	PSBY.1
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	23.21	0.9463	ROC4.1

Compare expression of checked genes

Potri.012G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.