Plant FIBer expression Database

Potri.012G144000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02260 582 / 0 Divalent ion symporter (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G146900
[exp]
614 / 0 AT1G02260 647 / 0.0 Divalent ion symporter (.1)
Potri.017G141600
[exp]
531 / 0 AT1G02260 569 / 0.0 Divalent ion symporter (.1)
Potri.017G141800
[exp]
524 / 0 AT1G02260 538 / 0.0 Divalent ion symporter (.1)
Potri.017G141950
[exp]
284 / 1e-93 AT1G02260 263 / 2e-85 Divalent ion symporter (.1)
Potri.017G141700
[exp]
84 / 8e-20 AT1G02260 140 / 7e-41 Divalent ion symporter (.1)
Potri.017G141650
[exp]
81 / 4e-19 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027497
[exp]
614 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
Lus10039251
[exp]
602 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03600 CitMHS Citrate transporter
Representative CDS sequence
>Potri.012G144000.5 pacid=42784373 polypeptide=Potri.012G144000.5.p locus=Potri.012G144000 ID=Potri.012G144000.5.v4.1 annot-version=v4.1
ATGGCAATGGCTCCTTTAGTGAAAGTGGTTCTAGGCACATTTGCCTTTGCAGTATTCTTGGTGCTGGCAGTTTTCCCTGCTGTTCCATTTCTGCCCATTG
GGAGGACTGCAGGATCTCTTTTAGGTGCAATACTCATGGTTATTTTCCAAGTCATATCTCCTTCTCAAGCATATGCTTCCATTGATCTTTCAATTCTTGG
CCTTCTCTTTGGAACAATAGTCGTGGGTGTCTATCTTGAAAGAGCAGATGCGTTTATGTACTTGAGCAAACTGCTGTCATGGAAGAGCCTTGGAGCAAAG
GATTTAGTTTGTAGAGTCTGCTTATTATCTGCCATTTCAAGTGCTTTCTTTACCAATGACACTTCTTGTATGATCTTGACTGAATTTGTACTCAAAGTTG
CAAAACAACACAATCTCTCGCCTCGACCTTTCTTGGTTGCTCTTGCCTCAAGTTCAAATATTGGGTCATCAGCAACTCCAATAGGCAACCCTCAAAACCT
GGTTGTTGCTGTAAATGGTCAGATTCCTTTTTTGACTTTCTTTGTTGGAATTGCACCTGCAGCACTTGTAGGAGTTTTTGTGAATGCTGTAGGTATCATA
TGTATGTATCGGAGAGAGTTATCTTCTCATCTTAAGGAAGAAGAAGATGCAAATGGGGAAGTTGTTGCTGATGATGACACGAGTTTCTACAGGTTTTTAC
CAGCCACATTGCCACATTTCCCACGCTCAAGCTTTCAAGAAAGAAGCTTCATGTTGGATATGCAGGGCTCGCCTTCAATTCATGGGAATTCGACTTATTT
TAACACGTTAAGATACAGATCTGGTGCTAGTGAGACTGACATGTTCAGGGTTCCCAGTATTATGTTAGAGTCTGCAGGAAACTCGAGTGCATGCTCGAAA
TGGAAACCCATACTGTGGAAATCTTGTGTGTACCTGGTGACTCTTGGGATGTTGATTGCTTTGGTTATGGGAGTAAATATGTCATGGGCTGCAATCACTG
CTGCTGTTGCTCTAATGGTTCTTGATTTCAAGGATGCTCAGCCATGCCTAGAGAAGGTTTCCTATTCTCTTTTGATTCTCTTTTGTGGGATGTTTATGAC
AATTGAAGGCTTCAATAAAACTGGATTTCCAAGCTGTTTGTGGGAATTCGTGGAGCCCTTCGCACAAATTAACCATGCTAGCGGGATAGCAGTCCTTGCA
GTTCTCATCGTTATCCTCTCAAATGTGGTGTCAAATGTACCAACTGTTCTCTTACTGGGGGCACGGATGGCAGCATCGGCAGCTTGTATTTCCCCGGATT
ACGTGAGGAAGTCATGGCTGATTTTAGCGTGGGTGAGCGCAGTGGCAGGTAACCTCTCGCTATTGGGTTCGGCTGCCAATATGATAGTGTGTGAGCAGGC
AAGCCGTGCCCCAGATCTTGGTTACAACTTATCTTTCTGGAGCCATCTCAAATTTGGAGTCCCCTCCACCATTATCGTCACTGCTATTGGTTTGACAATC
ATTAGATAG
AA sequence
>Potri.012G144000.5 pacid=42784373 polypeptide=Potri.012G144000.5.p locus=Potri.012G144000 ID=Potri.012G144000.5.v4.1 annot-version=v4.1
MAMAPLVKVVLGTFAFAVFLVLAVFPAVPFLPIGRTAGSLLGAILMVIFQVISPSQAYASIDLSILGLLFGTIVVGVYLERADAFMYLSKLLSWKSLGAK
DLVCRVCLLSAISSAFFTNDTSCMILTEFVLKVAKQHNLSPRPFLVALASSSNIGSSATPIGNPQNLVVAVNGQIPFLTFFVGIAPAALVGVFVNAVGII
CMYRRELSSHLKEEEDANGEVVADDDTSFYRFLPATLPHFPRSSFQERSFMLDMQGSPSIHGNSTYFNTLRYRSGASETDMFRVPSIMLESAGNSSACSK
WKPILWKSCVYLVTLGMLIALVMGVNMSWAAITAAVALMVLDFKDAQPCLEKVSYSLLILFCGMFMTIEGFNKTGFPSCLWEFVEPFAQINHASGIAVLA
VLIVILSNVVSNVPTVLLLGARMAASAACISPDYVRKSWLILAWVSAVAGNLSLLGSAANMIVCEQASRAPDLGYNLSFWSHLKFGVPSTIIVTAIGLTI
IR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02260 Divalent ion symporter (.1) Potri.012G144000
[exp]
0 1
AT3G44540 FAR4 fatty acid reductase 4 (.1.2) Potri.019G075201
[exp]
1.00 0.9995
AT2G45180 Bifunctional inhibitor/lipid-t... Potri.018G025900
[exp]
1.41 0.9992
AT1G68530 KCS6, CER6, POP... POLLEN-PISTIL INCOMPATIBILITY ... Potri.010G125300
[exp]
4.24 0.9990 CUT1.1
AT1G27950 LTPG1 glycosylphosphatidylinositol-a... Potri.001G056200
[exp]
5.09 0.9967
AT1G68530 KCS6, CER6, POP... POLLEN-PISTIL INCOMPATIBILITY ... Potri.008G120300
[exp]
5.29 0.9987
AT1G29660 GDSL-like Lipase/Acylhydrolase... Potri.018G089500
[exp]
6.00 0.9968
AT4G38770 ATPRP4, PRP4 ARABIDOPSIS THALIANA PROLINE-R... Potri.004G168600
[exp]
6.32 0.9972
AT4G33790 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIF... Potri.009G144900
[exp]
7.48 0.9977
AT1G27940 ABCB13, PGP13 ATP-binding cassette B13, P-gl... Potri.002G019600
[exp]
8.94 0.9954
AT2G10940 Bifunctional inhibitor/lipid-t... Potri.018G126000
[exp]
11.00 0.9970

Potri.012G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.