Plant FIBer expression Database

Potri.012G144200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1)
AT5G52430 374 / 9e-126 hydroxyproline-rich glycoprotein family protein (.1)
AT1G63720 151 / 6e-41 unknown protein
AT1G76660 131 / 3e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G102200
[exp]
318 / 1e-103 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1)
Potri.003G129400
[exp]
234 / 2e-71 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
Potri.002G001100
[exp]
132 / 3e-33 AT1G76660 487 / 1e-170 unknown protein
Potri.005G260000
[exp]
123 / 2e-30 AT1G76660 453 / 7e-158 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039253
[exp]
567 / 0 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1)
Lus10027498
[exp]
427 / 7e-143 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1)
Lus10024642
[exp]
253 / 2e-78 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1)
Lus10032276
[exp]
244 / 5e-75 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1)
Lus10017503
[exp]
172 / 3e-46 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1)
Lus10028779
[exp]
168 / 6e-45 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1)
Lus10016050
[exp]
125 / 3e-31 AT1G76660 438 / 5e-152 unknown protein
Lus10025171
[exp]
122 / 2e-29 AT1G76660 420 / 1e-141 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G144200.3 pacid=42782620 polypeptide=Potri.012G144200.3.p locus=Potri.012G144200 ID=Potri.012G144200.3.v4.1 annot-version=v4.1
ATGAGAAGTGTCAATAATAGCAGCATCGAAACCGTTAACGCCGCTGCTACCGCCATCGTCTCCGCCGAGTCTCGTGTCCAGCCATCCTCTTCTTCTGTTC
AAAAAAGAAGGTGGGGAGGCTGCTGGAGTCTCTACTGGTGTTTTGGTTCTCACGGTTCTCACAAGAATAGCAAGCGAATTGGTCATGCTGTCCTTGTTCC
TGAACCAGAAGTACCAGGAGCAGTATCCTCTTCAACTGAAAATCAGACTCAGTCAACTCCCATTCTGCTGCCCTTTATTGCTCCTCCCTCTTCTCCTGCT
TCTTTCCTCCAGTCTGATCCCCCTTCCTCCACTCAATCACCAGCAGGATTGCTCTCTCTCACGTCCCTCTCGGCGAATGCTTATTCCCCACGCGGACCTG
CATCCATTTTTGCCATAGGCCCTTATGCACATGAAACCCAGCTAGTCACACCACCTGTGTTTTCTGCTTTCACCACTGAGCCATCCACTGCTCCATTCAC
TCCCCCTCCGGAGTCTGTTCAACTTACTACACCTTCATCTCCTGAAGTGCCATTTGCTCAACTCTTGACGTCCTCTCTGGAACGTGCTCGAAGAAATAGT
GGCCCCAATCAAAAGTTTTCGTTATCTCACTATGAATTTCAGTCATATCATCTGTACCCAGGAAGCCCAGGTGGTCAAATCATCTCACCAGGATCAGCAA
TCTCGAATTCAGGTACCTCTTCTCCGTTCCCCGATAGACATCCTATGCTTGAGTTCCGAATGGGTGAGGCTCCCAAGCTCCTGGGCTTCGAACATTTTAG
TACTCGTAAATGGGGTTCAAGATTGGGTTCTGGATCTTTGACACCGGATGGTTTGGGGCTAGGTTCGAGGCTTGGTTCTGGTACAGCGACTCCAGATGGC
ATGGGATTATCCAGGCTCGGTTCCGGTACGGTGACCCCAGATGGCATGGGGCTATCGAGGCTCTGTTCTGGAACTGCCACTCCAGATGGTGCGGGCCTGC
GTTCAAGGCTTGGCTCAGGAACTTTGACCCCTGATTGCTTCGTGCCTGCCTCGCAAATTGGTTTCCTTTTGGAGAACCAAATTTCTGAGGTTGCATCACT
TACCAACTCAGAAAATGGATCAAAAACCGAAGAAAATGTGGTTCACCACAGAGTCTCCTTTGAGTTGAGCGGTGAAGAGGTTGCGCGTTGTCTTGAAATT
AAGTCAGTGGCATCCACTAGAACTTTCCCAGAGTATCCACAGGACACCATGCCCGAAGACCCAGTGAGAGGTGATAGGTTAGCAATGAATGGTGAACGTT
GCTTACAAAACGGGGAAGCTTCCAGTGAAATGCCTGAGAAAAATTCAGAAGAAACAGAAGAGGATCACGTCTATAGAAAGCATCGATCCATCACTCTTGG
GTCAATAAAAGAGTTTAACTTTGATAACTCTAAAGGAGAAGTCTCTGATAAGCCTGCTATCAGCTCTGAGTGGTGGGCAAATGAAACGATTGCTGGGAAG
GAAGCTAGACCTGCCAACAGCTGGACTTTCTTTCCTCTGCTACAGCCAGAGGTGCCCTCACTATAG
AA sequence
>Potri.012G144200.3 pacid=42782620 polypeptide=Potri.012G144200.3.p locus=Potri.012G144200 ID=Potri.012G144200.3.v4.1 annot-version=v4.1
MRSVNNSSIETVNAAATAIVSAESRVQPSSSSVQKRRWGGCWSLYWCFGSHGSHKNSKRIGHAVLVPEPEVPGAVSSSTENQTQSTPILLPFIAPPSSPA
SFLQSDPPSSTQSPAGLLSLTSLSANAYSPRGPASIFAIGPYAHETQLVTPPVFSAFTTEPSTAPFTPPPESVQLTTPSSPEVPFAQLLTSSLERARRNS
GPNQKFSLSHYEFQSYHLYPGSPGGQIISPGSAISNSGTSSPFPDRHPMLEFRMGEAPKLLGFEHFSTRKWGSRLGSGSLTPDGLGLGSRLGSGTATPDG
MGLSRLGSGTVTPDGMGLSRLCSGTATPDGAGLRSRLGSGTLTPDCFVPASQIGFLLENQISEVASLTNSENGSKTEENVVHHRVSFELSGEEVARCLEI
KSVASTRTFPEYPQDTMPEDPVRGDRLAMNGERCLQNGEASSEMPEKNSEETEEDHVYRKHRSITLGSIKEFNFDNSKGEVSDKPAISSEWWANETIAGK
EARPANSWTFFPLLQPEVPSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25620 hydroxyproline-rich glycoprote... Potri.012G144200
[exp]
0 1
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Potri.010G099300
[exp]
2.44 0.8455
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Potri.003G064100
[exp]
4.58 0.8493
AT2G47070 SBP SPL1 squamosa promoter binding prot... Potri.010G154000
[exp]
7.21 0.8422 Pt-SPL1.4
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.002G110800
[exp]
10.67 0.8117
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Potri.015G084000
[exp]
10.95 0.8321
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.005G116400
[exp]
18.16 0.8293
AT4G16110 GARP ARR2 response regulator 2 (.1) Potri.008G135500
[exp]
22.58 0.8030
AT5G35560 DENN (AEX-3) domain-containing... Potri.006G143000
[exp]
23.49 0.8197
AT5G20030 Plant Tudor-like RNA-binding p... Potri.005G216200
[exp]
24.24 0.8098
AT5G13660 unknown protein Potri.006G082800
[exp]
24.49 0.8260

Potri.012G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.