Plant FIBer expression Database

Pt-HCF106.2 (Potri.012G144300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-HCF106.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52440 216 / 7e-70 HCF106 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
AT5G28750 54 / 4e-09 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G147100
[exp]
364 / 3e-128 AT5G52440 209 / 2e-67 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Potri.005G053400
[exp]
63 / 4e-12 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Potri.013G040900
[exp]
62 / 2e-11 AT5G28750 97 / 5e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039254
[exp]
201 / 1e-63 AT5G52440 174 / 5e-53 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Lus10027499
[exp]
198 / 6e-59 AT4G14147 254 / 2e-81 protein binding (.1.2)
Lus10006588
[exp]
58 / 2e-10 AT5G28750 130 / 3e-39 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Lus10015910
[exp]
53 / 3e-08 AT5G28750 103 / 2e-28 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02416 TatA_B_E mttA/Hcf106 family
Representative CDS sequence
>Potri.012G144300.1 pacid=42783794 polypeptide=Potri.012G144300.1.p locus=Potri.012G144300 ID=Potri.012G144300.1.v4.1 annot-version=v4.1
ATGGTCATGGCATCACTAATTCCAACCTCAGCATCCTTGTGCTCAACTTCAACAAGCACAAAATCAGCTCTCTACCCTCTCCCCCCCTCTCCTCTAATCC
CGTACCATAAAGCACCCAAATTTGGTCTCTCGACATGGATTCCTCAACTGTGTCTTGGTCCTTTCTCTCAATGGAGTGGTTTAAAGCATCTGGGTATCTC
ATTCTCTCCCAATTTCGTTGCTAAAGAGAGGAAAGGAAGGTGTAAGGGTAAGGTGATTCATGCATCTTTGTTCGGTGTTGGGGCTCCTGAGGCTCTGGTT
ATTGGTGTGGTGGCTTTGCTGGTTTTTGGTCCCAAAGGTCTTGCTGAGGTTGCACGCAATCTAGGGAAAACTCTACGTGAATTTCAACCCACAATTAAAG
AACTTCAGGAGGTGTCAAGGGAATTCAAGAGCACCCTTGAGCGAGAGATTGGGCTTGATGAAATTTCAAATCAAACTCAAAACACATATAGCTCAAAGAT
AACAAACACTGCATCAAACCCTTCATCAGCTGGCAGCACCAATATTTCTCCGACCGTGACTGACCCCAATGGTGCTCCATCCCCAAACAGTGCTTATACC
AGTGAAGAGTACTTGAAAATCACAGAAGAGCAGCTAAAAGCATCTGCTGCTGAACAACAGGGTCTGTCAACCCCTCCAGTAGAAAGTCAGTTGGAACCTG
AAACTCAGCTTCGGCCACAAGAGCCCGTCAAAGATACTGCTGGTGCGATGCCTTCTCCAGAAAAGCCAGAAAATGAAGTCAAAACTATTAAGTAA
AA sequence
>Potri.012G144300.1 pacid=42783794 polypeptide=Potri.012G144300.1.p locus=Potri.012G144300 ID=Potri.012G144300.1.v4.1 annot-version=v4.1
MVMASLIPTSASLCSTSTSTKSALYPLPPSPLIPYHKAPKFGLSTWIPQLCLGPFSQWSGLKHLGISFSPNFVAKERKGRCKGKVIHASLFGVGAPEALV
IGVVALLVFGPKGLAEVARNLGKTLREFQPTIKELQEVSREFKSTLEREIGLDEISNQTQNTYSSKITNTASNPSSAGSTNISPTVTDPNGAPSPNSAYT
SEEYLKITEEQLKASAAEQQGLSTPPVESQLEPETQLRPQEPVKDTAGAMPSPEKPENEVKTIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52440 HCF106 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.012G144300
[exp]
0 1 Pt-HCF106.2
AT1G01080 RNA-binding (RRM/RBD/RNP motif... Potri.014G105800
[exp]
2.44 0.9722
AT3G02100 UDP-Glycosyltransferase superf... Potri.004G123500
[exp]
3.00 0.9743
AT5G57030 LUT2 LUTEIN DEFICIENT 2, Lycopene b... Potri.006G147300
[exp]
3.16 0.9738
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G058400
[exp]
3.16 0.9778 PtrTrxm3
AT1G50450 Saccharopine dehydrogenase (.... Potri.009G050100
[exp]
3.46 0.9673
AT3G09210 PTAC13 plastid transcriptionally acti... Potri.006G094800
[exp]
7.21 0.9759
AT2G02500 MCT, ATMEPCT, I... 2-C-METHYL-D-ERYTHRITOL 4-PHOS... Potri.004G230200
[exp]
7.61 0.9525
AT3G24590 PLSP1 plastidic type i signal peptid... Potri.018G081800
[exp]
9.79 0.9657
AT3G26900 ATSKL1 Arabidopsis thaliana shikimate... Potri.017G062800
[exp]
10.00 0.9742 SK1
AT5G45170 Haloacid dehalogenase-like hyd... Potri.015G112500
[exp]
10.48 0.9685

Potri.012G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.