Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09980 873 / 0 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT4G10760 129 / 3e-30 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147200 [exp] 1792 / 0 AT4G09980 899 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.001G085200 [exp] 137 / 9e-33 AT4G10760 627 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014971 [exp] 1166 / 0 AT4G09980 927 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10038853 [exp] 1160 / 0 AT4G09980 929 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10010408 [exp] 135 / 5e-35 AT4G10760 447 / 2e-154 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10010405 [exp] 135 / 2e-32 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10012141 [exp] 134 / 6e-32 AT4G10760 807 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05063 [poplar] [flax] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Potri.012G144400.2 pacid=42784145 polypeptide=Potri.012G144400.2.p locus=Potri.012G144400 ID=Potri.012G144400.2.v4.1 annot-version=v4.1 ATGGAATCGCCTGAACGTTCTAGTCGTAGTTATGGGAGAAAGGATGTAGAAGATAGTTCAGATGTGAAGAGTGATAGGGGCGGGGATGATGAAGAATGGG ATGTGAGTGATAAGAGGAAACACAGGTCTATCAAGTCTAGGATGTCCACCAATGGGGAGGATGCTGAAGGATTCGATGGGGGTGGGAGAAGGAGAACTTC AGGCGGGGACAGGAATGATAGTCGTAAGAGGTCAGGTGGTGGTGGGTCAAGTAAAGTGGGTAGTGATGAAGATGATTATGAGACGAGAAAAGAGATGCGT TCTAAGCAGATGAAGAAAAAACAGGAGGAAAGTAGTTTGGAAAAATTGAGCAGTTGGTATCAGGATGGAGAATTAGACAACAAGCAGAGTGGAGGTGACA AGTCTGTTGGTAAAGGCCATGGTCGCCCTGATGAAAGTGAGAGAAGGAAAATGATATCAAAGATCTTGGAGCATGAGAGTTCCCGTAAGGCAAGTAAAAG TAGAGAAGAAAGATCCTATGATGGAGAGATTGAAAAGGCACTGGGTAGAGATTCTAGATATTCAGAAAGGAAGGATAGCAGCCGAGATAAAGGTCACGGT TCTGCTGAGACAGGGAAAAATTCTAGGAGAAGGTGGGATGAATCTGACTCCAACAGAAAAGCCGAAGAAAATCATCATGAAAAGTCTGATTTCATAAGTG GAAAGATGTCTGATTCCAATCACGAGTCTAAAGAAAGAAGTGCTAGAATCGAACCTAGTGAGAGTAAAAGCAGGGGTTTGGATTCAAACAGTGAAAAGGG CGCCAAAACTAGCAACAGAGATGACAAAAGAGCTGATGCAGACAGGGAGAAGAATAAGAGTAAAAGCAGGTCAGAAGCTGCCAAAGAAGATAACGGGGCT AGTCCTATCACCCGTGAAGATAGATCAGGTCGGGAGAAAATTGAGAAGCATAGAGAGCAGAGAACTCCCACTAGAAAAGATGTTTCTGAAAGCCGTGAAA GGTCCTCCAATGCAGAAGAAGATGGAAACACGTGGGTGGGAGATAAAAGTGCAAGAGAAGTAGGGCGGTCTAATAGGTCCAGGACTCCCGAGAGGAGCAT TAGGCATCATCAAGAATCTCAACATTCTGAAATAGAGTATGAAAGAGATGTTGACACAAGACGGAAGGATCAAGAAAAGGATGGCTACAGGGATGATAGA TCGAAAGGCAGGGATGACAGCTGGAATGACAGGAATAGGGATCGGGAAAGTTCCAAAGAGAACTGGAAAAGAAGACAACCTTCTGGTAATGATAGGGAGC CAAAAGACGGGGACATTGCTTATGATCGTGGAAGAGACTGGGAGCCAAGACATGGTCGTGAAAGGAATGACAATGAAAGGCCTCATGGTCGAAGCAGGGG TGAAGCTGTGAAAACCTCCTCAAATTTTGGGATTTCAAATGATAATTATGATGTGATAGAGGTCCCGCTTGATCATGGACGACCAGAGGCTAGATCCAAC TTTGCTAGGAGGATTGAGGTCAGTCAGCAGTCTGATGTAAAATCAGCACCAAACACTGAAGAGTGGGCATACATGCAAGGTGAAAGGGCAAGAAGGAATG ACTCACCTTTTCTTGGAGACTCAAAGGACAAGTATATGGATGATGATGCACCATTGCGAGATCCGAGTTCTTGGAGGGATGACGTTGAGTACCAGGGAGG GAAAGGGAGAGGCCAAAAGGGGGCCATGCCCAGTCGCGGTGTTGGTGGTCAAAGTTCTAGCAGTGGTTCACAGACTCCATATAGAAACCAGGATCCAGGC TCCTTTGGCAGAGGTTCTCCACAGGGAGTAAAAGGAAGTAGAGTAGGGAGAGGAGGAAGGGGGAGGCCTGCTGGGAGAGATAACCAACAGGTTACACTCC CGTTGCCATTAATGGGATCACCTTTTGGGTCTCTTGGAATGCAACCACCTGGAGCACTTCAGCCTCTTGCTCCTAGTATGTCACCTGCTCCGTGTCCTCC AATTAGTCCAGGTGTCTTCATTCCACCATTTTCTTCACCAGTTGTTTGGGCTGGTGCCCGAGGTGTGGAGATGAATATGCTTGGTGTCCCCCCTGCTCTC TCTGCTGTTCCTCCTGGGCCCACAACGCCAAGATTTCCCCCTAACATGGGAACAAATCCATCAAACCCTGCTATGTTTTTTAATCAAGCAGGACCTGGCA GGGGAATGCCTCCAAGCATACCTGGTCCTGGTTTTAATGCTTCTGGACCAGTAGGACGAGGAACACCACCAGATCAAAATGCCGGGGGTTGGATTCCTCC TAGAAATAACGGTCCTCCAGGTAAAGCTCCTTCAAGAGGAGAGCAGAATGATTACTCACAGAATTTTGTTGATACTGGTATGCGACCCCAGAACTTTATC AGAGAGCTAGAGCTGACCAATGTTGTAGAGGATTATCCCAAGCTTAGGGAGCTTATACAGAAAAAGGATGAGATTGTGGCTCAATCTGCTTCTCCTCCCA TGTACATGAAATGCGACCTACACGAGTTTGAGCTGTCTCCAGAGTTCTTTGGAACCAAGTTTGATGTTATTCTGGTGGACCCTCCATGGGAGGAATATGT TCATCGAGCTCCTGGTGTTGCTGACCATATGGAGTATTGGACTTTTGAAGAAATACTAAATCTTAAGATTGAGGCAATTGCAGATACGCCTTCTTTTATC TTCCTCTGGGTGGGTGATGGTGTTGGTCTTGAGCAAGGCCGCCGCTGTTTAAAGAAGTGGGGATTTCGGAGATGCGAAGATATTTGTTGGGTGAAGACCA ACAAAAGCAACGCAACTCCAGGGCTCCGACATGATTCCCATACTTTGTTTCAGCATTCAAAGGAACACTGCTTGATGGGTATAAAAGGAACTGTTCGCCG CAGCACTGATGGTCACATCATCCATGCTAACATTGATACTGATGTAATTATTGCTGAGGAACCTCCTTATGGTTCAACTCAAAAGCCTGAAGACATGTAT AGGATAATTGAGCATTTCTCTCTAGGCCGCAGAAGGCTTGAGCTCTTTGGCGAAGATCACAATATTCGATCTGGTTGGCTGACTGCTGGTAAAGAATTAT CTTCATCAAATTTCAATGCTGAGGCGTACATCAGGAATTTTGCTGACAAGGATGGCAAAGTTTGGCAAGGAGGGGGTGGAAGAAATCCTCCTCCTGAGGC GCCTCATCTTGTTGTGACTACCCCTGATATAGAGGCTCTACGCCCTAAGTCACCAATGAAGAACCAGCAGCAGCAATCAGTATCTATTTCTCTGACAGCA GCCAATTCCTCCAACAGAAGGCCAGCTGGAAATTCTCCTCAGAATCCAAGTACTTTCAGTTTAAACCAAGAGGCCTCTAGTGCTAACCCTTCAACCCCAG CCCCTTGGGCATCATCACCAATGGAAGGCTGTAGAGGACGAGAGGGTGGGAATATGCCTTCAGAAGACAAGGTCTTTGATATGTATGGTTATAGTGGGCA GGCAAATGGAGATTATCTAGATTTTGAATCCCACAGACCTATGAATTTGTTGTAA
AA sequence Show only first row Show all	>Potri.012G144400.2 pacid=42784145 polypeptide=Potri.012G144400.2.p locus=Potri.012G144400 ID=Potri.012G144400.2.v4.1 annot-version=v4.1 MESPERSSRSYGRKDVEDSSDVKSDRGGDDEEWDVSDKRKHRSIKSRMSTNGEDAEGFDGGGRRRTSGGDRNDSRKRSGGGGSSKVGSDEDDYETRKEMR SKQMKKKQEESSLEKLSSWYQDGELDNKQSGGDKSVGKGHGRPDESERRKMISKILEHESSRKASKSREERSYDGEIEKALGRDSRYSERKDSSRDKGHG SAETGKNSRRRWDESDSNRKAEENHHEKSDFISGKMSDSNHESKERSARIEPSESKSRGLDSNSEKGAKTSNRDDKRADADREKNKSKSRSEAAKEDNGA SPITREDRSGREKIEKHREQRTPTRKDVSESRERSSNAEEDGNTWVGDKSAREVGRSNRSRTPERSIRHHQESQHSEIEYERDVDTRRKDQEKDGYRDDR SKGRDDSWNDRNRDRESSKENWKRRQPSGNDREPKDGDIAYDRGRDWEPRHGRERNDNERPHGRSRGEAVKTSSNFGISNDNYDVIEVPLDHGRPEARSN FARRIEVSQQSDVKSAPNTEEWAYMQGERARRNDSPFLGDSKDKYMDDDAPLRDPSSWRDDVEYQGGKGRGQKGAMPSRGVGGQSSSSGSQTPYRNQDPG SFGRGSPQGVKGSRVGRGGRGRPAGRDNQQVTLPLPLMGSPFGSLGMQPPGALQPLAPSMSPAPCPPISPGVFIPPFSSPVVWAGARGVEMNMLGVPPAL SAVPPGPTTPRFPPNMGTNPSNPAMFFNQAGPGRGMPPSIPGPGFNASGPVGRGTPPDQNAGGWIPPRNNGPPGKAPSRGEQNDYSQNFVDTGMRPQNFI RELELTNVVEDYPKLRELIQKKDEIVAQSASPPMYMKCDLHEFELSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTFEEILNLKIEAIADTPSFI FLWVGDGVGLEQGRRCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPPYGSTQKPEDMY RIIEHFSLGRRRLELFGEDHNIRSGWLTAGKELSSSNFNAEAYIRNFADKDGKVWQGGGGRNPPPEAPHLVVTTPDIEALRPKSPMKNQQQQSVSISLTA ANSSNRRPAGNSPQNPSTFSLNQEASSANPSTPAPWASSPMEGCRGREGGNMPSEDKVFDMYGYSGQANGDYLDFESHRPMNLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	0	1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.006G120200 [exp]	1.00	0.9378
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	1.41	0.9316	HAC901,Pt-HAC1.4
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	2.44	0.9172
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	4.00	0.9030
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	4.47	0.9139
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	5.29	0.9163	Pt-RPB1.1
AT2G33490			hydroxyproline-rich glycoprote...		Potri.017G063000 [exp]	6.32	0.8675
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	7.34	0.9074	Pt-LD.2
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	7.54	0.8838
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	8.36	0.9049

Compare expression of checked genes

Potri.012G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.