Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23940 590 / 0 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G01210 240 / 2e-73 HXXXD-type acyl-transferase family protein (.1) AT2G39980 229 / 4e-69 HXXXD-type acyl-transferase family protein (.1) AT5G67150 201 / 7e-59 HXXXD-type acyl-transferase family protein (.1) AT5G42830 200 / 2e-58 HXXXD-type acyl-transferase family protein (.1) AT5G07870 197 / 3e-57 HXXXD-type acyl-transferase family protein (.1) AT5G07850 193 / 8e-56 HXXXD-type acyl-transferase family protein (.1) AT3G50270 193 / 9e-56 HXXXD-type acyl-transferase family protein (.1) AT3G50280 191 / 3e-55 HXXXD-type acyl-transferase family protein (.1) AT5G07860 187 / 2e-53 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147300 [exp] 805 / 0 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 247 / 6e-76 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 247 / 6e-76 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 231 / 1e-69 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 225 / 1e-67 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 215 / 2e-64 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 213 / 2e-63 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.003G057001 [exp] 210 / 3e-62 AT5G67150 275 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 184 / 1e-52 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027500 [exp] 612 / 0 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 608 / 0 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039255 [exp] 218 / 4e-69 AT5G23940 206 / 3e-65 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 211 / 2e-62 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 209 / 1e-61 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 201 / 2e-59 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10021394 [exp] 170 / 4e-47 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 170 / 6e-47 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10031148 [exp] 169 / 1e-46 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 163 / 2e-44 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.012G144500.1 pacid=42783309 polypeptide=Potri.012G144500.1.p locus=Potri.012G144500 ID=Potri.012G144500.1.v4.1 annot-version=v4.1 ATGACTCCCAACCACACCAGAATCACATCTTCTATAAGTATCCCTTGTCTCTCTCTTCAGCTTTCCATAACCACACAGATTATCTGTCTGTCTTGTGTAG GTCCTGAAGCACAAGCTTCTTTCTCAGCTTTAATTAGGCACACTCCTGAATACCATCAACAATCAGCAATGGCCCCCGAGGCAGAATATAAGGAGGAGGA GATCATGAAGGTGAAAATAACTGGCAAATCCCATGTCAAGCCCAGCAAAAAACTAGGAAGAAGGGAATGTCGATTGGTGACCTTTGATCTTCCATACATT GCATTTCACTACAACCAGAAGTTGTTAGTTTACAAGGGAAATGAGTATGAGGACATGGTAGGGAAGCTGAAGGATGGGCTTGGAGCTGTCTTGGAGGATT TCTACCAACTGGCCGGGAAACTAGCAAGAGATGAAGAAGGGGTGCTCAGTGTAGAATATGACGATGATATGGAGGGTGTTGAGGTGGTGGAGGCCAATGC TGAGTGGATCAGTGTGGAGGATCTAGCTGTTGAGCTGGGTACCTCCACGTTGAAGGAGCTCATACCTTACAATGGGATCTTGAACTCTGAGGGACTCCAC AGACCATTATTGTCGATGCAGCTAACCAAGCTGGAAGATGGACTAGCAATGGGGTTGGCCTTCAACCATGCCATCATTGATGGGACCTCCACGTGGCACT TTATGAGTTCATGGGCCCAGATTTGCAGTGGGCTGCCTTCAGTCACTGTCTTGCCTTTCCTGGACCGCACCAAAGTGAGAAACACTAAAGTAAAGCTACA CCCACCACCGCCAGATCAGGACGCACAAAATGCATCATCCAACGGCACTGCTGACGCTAAGCCTGTTGATCCGCCACTCAGAGAGCGAGTCTTCAAATTC TCTGAATCAGCAATTGACAAGATCAAGTCAAAAGTCAACTCAAACCCACCATCCGACGGCTCAAAACCATTCTCGACTTTTCAATCACTTGCTGTCCATA TGTGGCGCCATGTAACACAAGCGCGTCAGCTTAAGCCTGAAGACCACACGGTCTTCACTGTCTTCGCTGACTGCCGCAAAAGGGTCGACCCGCCAATGCC GGAAAGTTACTTTGGTAACCTAATTCAGGCCGTATACACGGTGACCGCTGTCGGGTTGCTGTCGATGAACCCGCCTGAGTTTGGAGCTTCCATGATACAA AAAGCCATTGAGATGCACGATGCTAAAGCCATTGAAGAGCGTAACAGGCAGTTTGAAAGGTCACCAAAGATATTTCAGTTCAAAGATGCGGGTGTTAACT GTGTCTCTGTTGGGAGCTCGCCAAGGTTTCCAGTTTATGAGGTGGATTTTGGGTGGGGAAAGCCAGAGACGGTGAGGAGTGGAATCAATAACAGGTTCGA TGGAATGGTGTATCTGTATCGAGGGAAGAGTGGTGGAAGGAGTATTGATGCGGAGATAAGCTTGGAAGCTGGAGCTATGGAGAGGTTGGAGGAGGACAAG GAGTTTGTTGTGGAGGTTAATTGA
AA sequence Show only first row Show all	>Potri.012G144500.1 pacid=42783309 polypeptide=Potri.012G144500.1.p locus=Potri.012G144500 ID=Potri.012G144500.1.v4.1 annot-version=v4.1 MTPNHTRITSSISIPCLSLQLSITTQIICLSCVGPEAQASFSALIRHTPEYHQQSAMAPEAEYKEEEIMKVKITGKSHVKPSKKLGRRECRLVTFDLPYI AFHYNQKLLVYKGNEYEDMVGKLKDGLGAVLEDFYQLAGKLARDEEGVLSVEYDDDMEGVEVVEANAEWISVEDLAVELGTSTLKELIPYNGILNSEGLH RPLLSMQLTKLEDGLAMGLAFNHAIIDGTSTWHFMSSWAQICSGLPSVTVLPFLDRTKVRNTKVKLHPPPPDQDAQNASSNGTADAKPVDPPLRERVFKF SESAIDKIKSKVNSNPPSDGSKPFSTFQSLAVHMWRHVTQARQLKPEDHTVFTVFADCRKRVDPPMPESYFGNLIQAVYTVTAVGLLSMNPPEFGASMIQ KAIEMHDAKAIEERNRQFERSPKIFQFKDAGVNCVSVGSSPRFPVYEVDFGWGKPETVRSGINNRFDGMVYLYRGKSGGRSIDAEISLEAGAMERLEEDK EFVVEVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.012G144500 [exp]	0	1
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	3.46	0.9892
AT5G39860	bHLH	BNQ1, BHLH136, ...	PACLOBUTRAZOL RESISTANCE1, BA...		Potri.017G081300 [exp]	5.09	0.9889
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126900 [exp]	6.70	0.9889
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	9.38	0.9885
AT4G08910			unknown protein		Potri.002G231400 [exp]	9.74	0.9877
AT2G18969			unknown protein		Potri.018G090200 [exp]	10.90	0.9868
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.015G147300 [exp]	10.95	0.9852
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	12.48	0.9875
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	12.64	0.9863
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	13.67	0.9846

Compare expression of checked genes

Potri.012G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.