Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23950 166 / 1e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G07310 110 / 7e-28 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 60 / 2e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 52 / 1e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 48 / 3e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 44 / 5e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G16510 41 / 0.0005 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G249300 [exp] 118 / 2e-31 AT1G07310 224 / 1e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 113 / 2e-29 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G043300 [exp] 106 / 6e-27 AT1G07310 205 / 9e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 65 / 1e-11 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 63 / 3e-11 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 63 / 4e-11 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 60 / 3e-10 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G065500 [exp] 52 / 1e-07 AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 48 / 3e-06 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039259 [exp] 214 / 2e-68 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 201 / 2e-63 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040692 [exp] 115 / 6e-30 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005867 [exp] 112 / 6e-29 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018213 [exp] 73 / 4e-15 AT1G07310 94 / 1e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 64 / 3e-11 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 63 / 5e-11 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 58 / 2e-09 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 45 / 3e-05 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 44 / 7e-05 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.012G144600.2 pacid=42783791 polypeptide=Potri.012G144600.2.p locus=Potri.012G144600 ID=Potri.012G144600.2.v4.1 annot-version=v4.1 ATGGCTTCTCGATACGAGTTTGAAGTCACCATCTCTTCTGCCAAATACCTCAAAAACGTTAACTGGCGCCATGGCTCTTTGAAGCCATATGCTGTCGTGT GGGTTGACTCCAACTACAAATGCTCCACTCAAGTCGACGACGAAGGCGACACCTCTCCTTTTTGGGACCAAACTCTGGTCATCCCCTTACCATCTGGTCG CATCGAAGACCACACCCTCCACATCGACATCGTCCACGCCGGCTCCGAGGAGGGCACCAAGCCCCTCATCGGCTCCGCTAAGCTCAAGCTCATTGACGTT CTCGACGACGTCGAAATCGGAGAACGAGCCACCCGCGCTCTCCAGCTCAAGCGTCCTTCCGGCAGACCACAGGGGAAACTCGACGTTAAGGTCACCATTA GAGACCCTCGCTATCGTGCTCCTGATGCTTACCGTGAACCTCCTTACGGGGTTCCTCCTCCGTCATCTTCGAGAGACTACCCTTACGCGACACCCTATGG TGCACCACCACCGCAGCCAAATCCGTACTATTCAACAGCAGCTCCGCCAACAGGGTATCCGTACAGCGCGCCCCCACCTCCGACATACGGGCAGCCGAGT TACGGTTATGGGGGTTACGGGTATGGAGAGCAGCAACCTGTGGTTGTGGAGGAGAAGAAGAAAAGTAAGTTTGGAGGGATGGGGACAGGATTGGCCGTGG GTGCGGTGGGTGGGGTCTTAGGTGGACTGGCATTGGCTGAGGCCATTGATGCTTTGGAAGACCATGTTGCTGATGACGTGGCAGAGAAAGTCGAGGATGA TCTTGCCTTCGATATGATGCTTTCTGATCTCTAA
AA sequence Show only first row Show all	>Potri.012G144600.2 pacid=42783791 polypeptide=Potri.012G144600.2.p locus=Potri.012G144600 ID=Potri.012G144600.2.v4.1 annot-version=v4.1 MASRYEFEVTISSAKYLKNVNWRHGSLKPYAVVWVDSNYKCSTQVDDEGDTSPFWDQTLVIPLPSGRIEDHTLHIDIVHAGSEEGTKPLIGSAKLKLIDV LDDVEIGERATRALQLKRPSGRPQGKLDVKVTIRDPRYRAPDAYREPPYGVPPPSSSRDYPYATPYGAPPPQPNPYYSTAAPPTGYPYSAPPPPTYGQPS YGYGGYGYGEQQPVVVEEKKKSKFGGMGTGLAVGAVGGVLGGLALAEAIDALEDHVADDVAEKVEDDLAFDMMLSDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23950			Calcium-dependent lipid-bindin...		Potri.012G144600 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Potri.018G066600 [exp]	1.41	0.8008
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.017G036800 [exp]	3.60	0.8167	UBQ11.2
AT5G61390			Polynucleotidyl transferase, r...		Potri.015G062000 [exp]	7.14	0.7905
AT3G21300			RNA methyltransferase family p...		Potri.001G194701 [exp]	15.42	0.7430
AT1G69588		CLE45	CLAVATA3/ESR-RELATED 45 (.1)		Potri.010G169300 [exp]	17.08	0.7797
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002300 [exp]	23.36	0.7724
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.008G147200 [exp]	25.69	0.7394
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.012G045000 [exp]	26.24	0.7479	Pt-ATTDX.1
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	33.94	0.7272
					Potri.005G086300 [exp]	34.48	0.7190

Compare expression of checked genes

Potri.012G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.