Plant FIBer expression Database

Potri.012G144700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49080 352 / 1e-118 Ribosomal protein S5 domain 2-like superfamily protein (.1)
AT1G74970 96 / 5e-23 TWN3, RPS9 ribosomal protein S9 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G039600
[exp]
94 / 3e-22 AT1G74970 268 / 4e-92 ribosomal protein S9 (.1)
Potri.002G132200
[exp]
92 / 1e-21 AT1G74970 267 / 1e-91 ribosomal protein S9 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038852
[exp]
370 / 6e-126 AT3G49080 370 / 9e-126 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Lus10032862
[exp]
96 / 1e-22 AT1G74970 282 / 1e-97 ribosomal protein S9 (.1)
Lus10016295
[exp]
95 / 1e-22 AT1G74970 276 / 3e-95 ribosomal protein S9 (.1)
Lus10014970
[exp]
268 / 2e-06 AT3G49080 274 / 8e-95 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF00380 Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence
>Potri.012G144700.1 pacid=42784010 polypeptide=Potri.012G144700.1.p locus=Potri.012G144700 ID=Potri.012G144700.1.v4.1 annot-version=v4.1
ATGGTGTGGTCTCGTCTCCTCCCAAAACCCTCCCATATCCGTCTCCTCTCTAGATCCCTGATAACTCCACGACCTCATAACTCCACCTCCTCCACTTTCC
TCCTACTCAGCAGACCCTTTTCTACTAACGACGACGACGACAACAACAACAACAACAAAAGAGACCAGCCAGGCTACAACATCTGGCAACTTTCCGGAGA
AAATGAAGGAAATTTCGATTCCTTCTTCCCCCAAGAATCGGACACTGGCGTTCCTGGCATCACCGATTCACCTGTGACCGCCAAGGGGGAGGATGAAGAG
TCGTGGCTAAAAGAAGATGAAAATGGTGACGACGGAGGTCGATATATATTTGATCGACTCGAGAAAGATGTGATTAATGAAAGGAGCGTTAGTGATATTG
GTGGTGGTGGTGGTGAATGGCGGACTTCATCGTTGGGGGTGAAGCAGTGGAGTTTTGAGGAGGAGGAGAAGGAGGATAAGGTGTTTGATTTTGGAGAGGG
TGTGGTACGGAGTGGTGAAGGTAATATTAATTGGGGCGAGAATGTTCCAAGTGAGAGAAGTGCTGAAGAGGAGAAGATGCTTGAGAAAGAAAAGGAGGAA
CTCAATGCCGTTCTCAAAGGTCCAAATCGTGCTTTTGGTGACCTTATTGCAGCATCTGGAATAACAGATGCAATGTTGGACAGTTTAATTGCCCTCAAGG
ATTTTGACGGGGTTGAAGGATTGCCTCCTTTAAGTGAGTTAGAGGATATGCGTTATGAAAAGAACATAATGAAATCCCCAAGAGCTGAAATAGAGCGCCA
GAAACAGGAAGAAATTGCTAGAGCTAGAGTGAGACAGGTTGATGATAAAGGAAGAGCTTATGGAACAGGAAGAAGGAAGTGTAGCATTGCTCGTGTTTGG
GTTCAACCTGGTGATGGAAAATTCATTGTTAATGACAAACAATTTGATGTCTATTTCCCAATGCTTGATCATCGTGCTGCCCTTTTGCGACCTTTCTCTG
AGACAAAGACCTTAGGTCTTTGGGATGTTACATGTACTGTCAAAGGCGGTGGTGTTTCAGGTCAAGTTGGAGCCATTCAGTTGGGGATCAGCAGGGCCAT
GCAAAACTGGGAACCAGACTTGCGTCCCACACTCAGAAGTGGCGGTTTCTTGACGAGAGATCCACGTGTGGTTGAAAGGAAAAAACCAGGAAAGGCAAAA
GCAAGAAAGAGCTTCCAATGGGTCAAACGTTAA
AA sequence
>Potri.012G144700.1 pacid=42784010 polypeptide=Potri.012G144700.1.p locus=Potri.012G144700 ID=Potri.012G144700.1.v4.1 annot-version=v4.1
MVWSRLLPKPSHIRLLSRSLITPRPHNSTSSTFLLLSRPFSTNDDDDNNNNNKRDQPGYNIWQLSGENEGNFDSFFPQESDTGVPGITDSPVTAKGEDEE
SWLKEDENGDDGGRYIFDRLEKDVINERSVSDIGGGGGEWRTSSLGVKQWSFEEEEKEDKVFDFGEGVVRSGEGNINWGENVPSERSAEEEKMLEKEKEE
LNAVLKGPNRAFGDLIAASGITDAMLDSLIALKDFDGVEGLPPLSELEDMRYEKNIMKSPRAEIERQKQEEIARARVRQVDDKGRAYGTGRRKCSIARVW
VQPGDGKFIVNDKQFDVYFPMLDHRAALLRPFSETKTLGLWDVTCTVKGGGVSGQVGAIQLGISRAMQNWEPDLRPTLRSGGFLTRDPRVVERKKPGKAK
ARKSFQWVKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49080 Ribosomal protein S5 domain 2-... Potri.012G144700
[exp]
0 1
AT2G31060 EMB2785 EMBRYO DEFECTIVE 2785, elongat... Potri.013G123700
[exp]
1.00 0.8676
AT5G23300 PYRD pyrimidine d (.1) Potri.005G089700
[exp]
1.73 0.8604
AT1G30960 GTP-binding family protein (.1... Potri.001G160800
[exp]
2.82 0.8613 Pt-ERG.1
AT1G61870 PPR336 pentatricopeptide repeat 336 (... Potri.004G018000
[exp]
3.46 0.8596
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.011G032400
[exp]
6.92 0.8369
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.006G039600
[exp]
8.94 0.8389
AT5G02050 Mitochondrial glycoprotein fam... Potri.006G090700
[exp]
9.38 0.8324 Pt-SDH4.3
AT5G22330 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.004G199100
[exp]
11.53 0.7860
AT3G01800 Ribosome recycling factor (.1) Potri.001G333700
[exp]
12.24 0.8222
AT3G27550 RNA-binding CRS1 / YhbY (CRM) ... Potri.001G343700
[exp]
14.07 0.8311

Potri.012G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.