Plant FIBer expression Database

Potri.012G144800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52470 462 / 2e-165 ATFIB1, ATFBR1, SKIP7, FIB1 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
AT4G25630 454 / 6e-162 ATFIB2, FIB2 fibrillarin 2 (.1)
AT5G52490 362 / 4e-126 Fibrillarin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G147500
[exp]
492 / 2e-177 AT5G52470 462 / 1e-165 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Potri.008G192700
[exp]
387 / 4e-136 AT5G52470 378 / 2e-132 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014969
[exp]
224 / 2e-72 AT5G52470 310 / 5e-106 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10039260
[exp]
217 / 1e-69 AT5G52470 312 / 3e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10027503
[exp]
216 / 3e-69 AT5G52470 313 / 2e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10038851
[exp]
199 / 3e-63 AT5G52470 221 / 9e-72 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Lus10018028
[exp]
41 / 0.0002 ND 41 / 5e-05
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01269 Fibrillarin Fibrillarin
Representative CDS sequence
>Potri.012G144800.3 pacid=42782674 polypeptide=Potri.012G144800.3.p locus=Potri.012G144800 ID=Potri.012G144800.3.v4.1 annot-version=v4.1
ATGGCTCCCCCAAGAGGACGAGGTGGCAGTGGTGGTGGGTTCAGGGGAGGCAGAGGTGATGGAGGAGGAAGAGGCAGAGGCAGAGGTTTTGGAGGAGGAA
GAGGAGGTGGGGGTGGAAGGGGTAGTGCCATGAAAACCAGAGGTGGTGGGGGAAGAGGCCGTGGTGGTGGAAGAGGCCGTGGGGGTGGAGGAATGAAAGG
TGGGAGCAAGGTTGTAGTGGAGCCTCATAGACATGAAGGGGTGTTCATTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATATGGTTCCTGGTGAA
ACTGTCTACAATGAGAAGAAGATCTCTGTCCAGAATGAAGATGGAACTAAAGTTGAATACAGGGTTTGGAACCCCTTCCGATCAAAATTGGCTTCTGCCA
TTCTTGGTGGTGTTGATGATGTTTGGATCAAACCTGGCGCTAAAGTTCTTTACCTGGGTGCTGCTTCTGGCACTACTGTTTCTCATGTATCTGATATTGT
TGGCCCTACTGGAGTGGTATATGCAGTAGAATTTTCTCACAGAAGTGGCAGAGACTTAGTTAACATGGCAAAGAAACGCACCAATGTAATTCCCATCATT
GAAGATGCCAGGCATCCTGCCAAGTACCGCATGCTAGTTGGCATGGTTGATGTGATCTTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTTTAGCAC
TCAATGCTTCCTATTTTCTGAAGTCTGGGGGTCATTTTGTTATTTCAATAAAGGCAAATTGCATAGATTCCACTGTCCCTGCCGAGGCAGTATTTGAAAG
TGAAGTGAAAAAGATGGTGCAGGAGCAGTTGAAGCCTACTGAACAGGTGACCCTCGAGCCGTTTGAGCGAGACCATGCCTGTGTGGTTGGTGGCTACCGT
ATGCCAAAGAAACAGAAAGTTGCTGCTTAG
AA sequence
>Potri.012G144800.3 pacid=42782674 polypeptide=Potri.012G144800.3.p locus=Potri.012G144800 ID=Potri.012G144800.3.v4.1 annot-version=v4.1
MAPPRGRGGSGGGFRGGRGDGGGRGRGRGFGGGRGGGGGRGSAMKTRGGGGRGRGGGRGRGGGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNMVPGE
TVYNEKKISVQNEDGTKVEYRVWNPFRSKLASAILGGVDDVWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPII
EDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVISIKANCIDSTVPAEAVFESEVKKMVQEQLKPTEQVTLEPFERDHACVVGGYR
MPKKQKVAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25630 ATFIB2, FIB2 fibrillarin 2 (.1) Potri.012G144800
[exp]
0 1
AT1G63660 GMP synthase (glutamine-hydrol... Potri.003G128200
[exp]
1.00 0.8611
AT2G38730 Cyclophilin-like peptidyl-prol... Potri.003G194500
[exp]
4.58 0.8599
AT2G19640 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-re... Potri.001G071700
[exp]
6.48 0.8285
AT4G19650 Mitochondrial transcription te... Potri.012G118200
[exp]
6.63 0.8415
AT1G15420 unknown protein Potri.001G173300
[exp]
8.36 0.8261
AT5G40520 unknown protein Potri.017G018300
[exp]
8.36 0.8164
AT3G06790 plastid developmental protein ... Potri.010G007200
[exp]
14.14 0.8197
AT2G35720 OWL1 ORIENTATION UNDER VERY LOW FLU... Potri.001G158200
[exp]
14.69 0.7835
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.001G173500
[exp]
15.16 0.8309
AT4G21520 Transducin/WD40 repeat-like su... Potri.011G043000
[exp]
15.87 0.8174

Potri.012G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.