Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25640 574 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00350 546 / 0 MATE efflux family protein (.1) AT3G26590 419 / 3e-142 MATE efflux family protein (.1) AT5G38030 417 / 1e-141 MATE efflux family protein (.1) AT1G12950 417 / 4e-141 RSH2 root hair specific 2 (.1) AT1G47530 411 / 1e-139 MATE efflux family protein (.1) AT1G23300 386 / 3e-129 MATE efflux family protein (.1) AT3G21690 363 / 2e-120 MATE efflux family protein (.1) AT1G33110 359 / 6e-119 MATE efflux family protein (.1.2) AT1G33100 353 / 1e-116 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147600 [exp] 733 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G161200 [exp] 515 / 0 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 442 / 6e-151 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 418 / 5e-142 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 395 / 5e-133 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102100 [exp] 375 / 3e-125 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 372 / 3e-124 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 365 / 3e-121 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 363 / 9e-121 AT3G03620 527 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039263 [exp] 609 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10027504 [exp] 599 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 587 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036374 [exp] 532 / 0 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10014760 [exp] 529 / 2e-177 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 432 / 3e-147 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 431 / 1e-146 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 417 / 1e-141 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 417 / 2e-141 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 416 / 3e-141 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.012G144900.1 pacid=42784034 polypeptide=Potri.012G144900.1.p locus=Potri.012G144900 ID=Potri.012G144900.1.v4.1 annot-version=v4.1 ATGGAGAGCACGACACCACTTCTGCAGCTCAATAATGGATCTTCGTCGTCGTCGTCGTCACCATTACCTGCACCAGCAGCACCACAAGAAGCAGAAGCAG AAGGAGACTACTCACCTGCAGTTTCCAAGACTTTCAAAGACTTTATGAAGTTCGTATTTTGGAAAGAGACTGTTAAGTTATGGAAGATTGGCGGTCCTAT TGCCATCACTCTGCTCTGTCAGTATGGTACCAACACTTTAACCTCTATCTTTGTTGGCCATCTTGGAAACTTGCAACTCTCTGCCGTTTCTGTTTCCCTC TCTGTCATCATGACCTTCGCTTTCGGCTTCCTTCTTGGTATGGGCAGTGCCCTCGAGACCCTCTGTGGTCAAGCTTTTGGTGCTGGTCAAGTTCATATGC TCGGTGTTTACTTGCAAAGATCAGCCATCATCTTATTCGTCAGTTGTGTCGTCCTCTTGCCCATTTACATTTTTTCCGCTCCTATCCTCAAAGTCATTGG CCAAGAAGATGATCTTTCGGACCTTGCCGGAAAATTCACCATCGTAGGCATACCTAATTTATTTTCACTGGCTATCTATTTCCCTACCCAAAAGTTCCTT CAAGCTCAACGCAAGGTTGGAGTACTTGCCTGTATTGCCTTTGCGACTCTCCTTCTACACGCTTTTTGGCTTTGGCTCTTCATCTATAAGCTTGGTTGGG GCGCCACTGGAGCAGCAATCGCTTTAGACCTTACTGGATGGTCAACTGCTCTGGCTCAAGCTGTGTACGTGATGGGCTGGTGTAAGGAAGGATGGCGTGG GTTTTCTTGGGCTGCATTTAAGGATATTTGGTCCTTCGTCACCCTCTCACTAGCTTCAGCTGTCATGCTTTGCCTGGAGCTCTGGTATATGATGAGTATT GTTATTCTCACTGGACATCTTAGTAACGCAGTCATTGCTGTTGGTGCCCTTACCATCTGCTTGAATATCAATGGCCTTGAACTAATGTTGTTCCTTGGAA TAAATGCTGCTATAAGCGTTCGTGTCTCGAATGAGCTTGGATTGGGGCATCCAAGAGCTGCAAAATACTCGGTCATGGTGACTGTGTTTCAGTCACTTGT GATTGGGCTCATTCTGATGGCTGTTGTGTTGGTAGCCAAGGACTATTTTGCCTACATCTTCACAAGCAACAAGGAGATGCAAGTAGCTACCTCCAAACTA GCATTCATTCTAGCCATCACCATGGTTCTTAACAGTGTCCAGCCAGTGATATCAGGTGTTGCTATTGGTGGTGGGTGGCAAGCATTAGTGGCCTATATCA ACATTGGTTGTTATTATGTTTTTGGGCTCCCCCTTGGCTACCTGCTTGGTTACAGAGCAAAGTTGGGAGTCGAGGGCGTATGGGGTGGCATGCTAGGCGG AACTGCTTTGCAGACCTTGCTGCTCTTGATTGTACTCTACAAAACCAACTGGAAAAAGGAGGTTGCAGAAACAGCAGAACGCATGAGGAAGTGGGGTGGC CAGGATATCAACAATAATGATGATCGTATAGGTGCTAACGGAGCGTGA
AA sequence Show only first row Show all	>Potri.012G144900.1 pacid=42784034 polypeptide=Potri.012G144900.1.p locus=Potri.012G144900 ID=Potri.012G144900.1.v4.1 annot-version=v4.1 MESTTPLLQLNNGSSSSSSSPLPAPAAPQEAEAEGDYSPAVSKTFKDFMKFVFWKETVKLWKIGGPIAITLLCQYGTNTLTSIFVGHLGNLQLSAVSVSL SVIMTFAFGFLLGMGSALETLCGQAFGAGQVHMLGVYLQRSAIILFVSCVVLLPIYIFSAPILKVIGQEDDLSDLAGKFTIVGIPNLFSLAIYFPTQKFL QAQRKVGVLACIAFATLLLHAFWLWLFIYKLGWGATGAAIALDLTGWSTALAQAVYVMGWCKEGWRGFSWAAFKDIWSFVTLSLASAVMLCLELWYMMSI VILTGHLSNAVIAVGALTICLNINGLELMLFLGINAAISVRVSNELGLGHPRAAKYSVMVTVFQSLVIGLILMAVVLVAKDYFAYIFTSNKEMQVATSKL AFILAITMVLNSVQPVISGVAIGGGWQALVAYINIGCYYVFGLPLGYLLGYRAKLGVEGVWGGMLGGTALQTLLLLIVLYKTNWKKEVAETAERMRKWGG QDINNNDDRIGANGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	0	1
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Potri.004G088100 [exp]	3.46	0.9423
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	3.74	0.9277
AT3G03620			MATE efflux family protein (.1...		Potri.013G069250 [exp]	4.12	0.9585
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G118100 [exp]	6.32	0.9342
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G096300 [exp]	7.93	0.9346
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	8.12	0.9224
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	8.71	0.9439	GC1.1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G036000 [exp]	9.59	0.9395
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G098100 [exp]	9.79	0.9364
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G095700 [exp]	10.39	0.9335

Compare expression of checked genes

Potri.012G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.