Plant FIBer expression Database

Potri.012G145000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58660 353 / 4e-119 Ribosomal protein L1p/L10e family (.1)
AT2G42650 301 / 1e-99 Ribosomal protein L1p/L10e family (.1)
AT1G06380 238 / 2e-76 Ribosomal protein L1p/L10e family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G147700
[exp]
482 / 2e-170 AT3G58660 348 / 9e-117 Ribosomal protein L1p/L10e family (.1)
Potri.004G202766
[exp]
50 / 5e-07 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1)
Potri.004G202832
[exp]
50 / 7e-07 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
Potri.007G035600
[exp]
50 / 7e-07 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
Potri.007G034800
[exp]
49 / 2e-06 AT2G27530 338 / 2e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024134
[exp]
349 / 4e-118 AT3G58660 351 / 2e-118 Ribosomal protein L1p/L10e family (.1)
Lus10005380
[exp]
341 / 4e-115 AT3G58660 354 / 1e-119 Ribosomal protein L1p/L10e family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00687 Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence
>Potri.012G145000.1 pacid=42783718 polypeptide=Potri.012G145000.1.p locus=Potri.012G145000 ID=Potri.012G145000.1.v4.1 annot-version=v4.1
ATGGCAGCCCTTCCAACACCATCTGGTTTTAGCCCCAAAACCGTGGAGAAAGCTGTGAACGCTCTTCTCAAATGGAGATCGTCCAAATTGAATACCCAAA
AGCCTCAACTACTGGAACATGACGAGTTTGTCTACCTTATCTTAACCCTCAAAAAGATCCCACATAAGGGTGTCAGCCGCATCAACGCCCACAAAATCCC
TCTCCCTTGCCCCTTAACCAACCCTCTAACTGAAGCCCCTGAGCTCTGCTTAATCATCGATGACAGACCCAAATCAGGCCTCAATAAAGATGCTGCCAAG
AAGAAGATTCAAAACGACAACATACCCATCTCCAAAATCATCAAGATTTCCAAGCTCAAGACCGATTACCGTCCTTTTGAGGCCAAGAGGAAACTCTGTG
ATTCTTATGATATGTTCTTTGCTGATAAAAGGGTGGTTCCTCTCTTGCCTAAGATGTTAGGGAAACAGTTTTTTAAGAAGAAGAAGATTCCGATGACTTT
GGATTTGAAGCACCAAAATTGGAAGGAGCAGATTGACAAGGCGTGTGGGTCTGCCTTGTTGTTCCTGAGGACTGGAACTTGTAGTGTGGTGAAGGTAGGG
AGGATTTCGATGAGTAGAGAGGAGATTTCCAAAAATGTGATGGCTGCTATTAATGGGATCGCGGAGATTGTGCCCAGGAAGTGGGGTGGTATTAGGTCTT
TCCATTTGAAGTTGCTTGATAGCCTGGCTTTGCCTGTTTATCAGGCAGTTCCTGATTTGAAGTTGAAGATTGATGGTAGTGCAAAAGAGCAGGAGGAGGA
GGATGTGGTCGCTGAGGAGGAAGATAAGGTTAAAGAGGGGAAAATTGGGAAAAAGAAGGGAAGGATACATGAGGTTAGATATATGGATAATAACGATGAT
GGTCGGGTTGTTGATGAGGATGAATTGGGGAGTGTCTTTGAAGGGGATATTGATAACCATGCTGATGATGATGTTGAAAAGGGCAGTGATGAATTATTGA
ATAAGAAGAGAAAGATGGGAGATAATAAAGGGAAAGGTGAGAAGAAGGTAGCTAAATTGAAGAAAGAAGATGGTTTCAAGCAAAAGAAAGCAAAGAATGA
AGATGTTACCAAGCAAAAGAAGATAAAGAAAAATGCTTTGGCTTTAGAGAGTGGGGGAATGCAAGTGAAGGATAACAAGAAGAAGAAAAGATTGGCTGCA
TAA
AA sequence
>Potri.012G145000.1 pacid=42783718 polypeptide=Potri.012G145000.1.p locus=Potri.012G145000 ID=Potri.012G145000.1.v4.1 annot-version=v4.1
MAALPTPSGFSPKTVEKAVNALLKWRSSKLNTQKPQLLEHDEFVYLILTLKKIPHKGVSRINAHKIPLPCPLTNPLTEAPELCLIIDDRPKSGLNKDAAK
KKIQNDNIPISKIIKISKLKTDYRPFEAKRKLCDSYDMFFADKRVVPLLPKMLGKQFFKKKKIPMTLDLKHQNWKEQIDKACGSALLFLRTGTCSVVKVG
RISMSREEISKNVMAAINGIAEIVPRKWGGIRSFHLKLLDSLALPVYQAVPDLKLKIDGSAKEQEEEDVVAEEEDKVKEGKIGKKKGRIHEVRYMDNNDD
GRVVDEDELGSVFEGDIDNHADDDVEKGSDELLNKKRKMGDNKGKGEKKVAKLKKEDGFKQKKAKNEDVTKQKKIKKNALALESGGMQVKDNKKKKRLAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58660 Ribosomal protein L1p/L10e fam... Potri.012G145000
[exp]
0 1
AT3G58660 Ribosomal protein L1p/L10e fam... Potri.015G147700
[exp]
2.00 0.8659
AT1G60620 ATRPAC43 RNA polymerase I subunit 43 (.... Potri.001G369500
[exp]
2.23 0.8347 Pt-ATRPAC42.1
AT4G38710 glycine-rich protein (.1.2) Potri.009G130200
[exp]
3.60 0.8084
AT1G80750 Ribosomal protein L30/L7 famil... Potri.001G047400
[exp]
6.24 0.8424
AT5G57120 unknown protein Potri.006G073100
[exp]
6.32 0.8436
AT1G75140 unknown protein Potri.002G262900
[exp]
6.63 0.7620
AT2G37990 ribosome biogenesis regulatory... Potri.005G231000
[exp]
9.16 0.8185
AT4G25210 GeBP DNA-binding storekeeper protei... Potri.009G088400
[exp]
11.00 0.8204
AT5G16930 AAA-type ATPase family protein... Potri.011G143300
[exp]
12.00 0.8307
AT3G55340 PHIP1 phragmoplastin interacting pro... Potri.010G209701
[exp]
14.69 0.7961

Potri.012G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.