Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24350 108 / 2e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G12640 96 / 6e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G10350 89 / 1e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G51120 79 / 4e-18 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G65260 76 / 4e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 50 / 5e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 50 / 7e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G64200 49 / 5e-07 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G78260 49 / 7e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 48 / 9e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079800 [exp] 110 / 4e-28 AT2G24350 102 / 8e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G269200 [exp] 96 / 4e-23 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G063800 [exp] 96 / 7e-23 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 84 / 5e-20 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.012G115100 [exp] 82 / 2e-19 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G051600 [exp] 79 / 3e-18 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G073200 [exp] 79 / 6e-18 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.007G095800 [exp] 78 / 9e-18 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.001G311600 [exp] 72 / 2e-15 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037701 [exp] 99 / 6e-24 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 94 / 3e-22 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 91 / 3e-21 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10032510 [exp] 86 / 1e-20 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 76 / 3e-17 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 76 / 4e-17 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040636 [exp] 57 / 2e-09 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10018277 [exp] 55 / 7e-09 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10002093 [exp] 52 / 6e-08 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10000826 [exp] 51 / 1e-07 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.012G145050.1 pacid=42784276 polypeptide=Potri.012G145050.1.p locus=Potri.012G145050 ID=Potri.012G145050.1.v4.1 annot-version=v4.1 ATGATAAAAGAAGATTCTAAAGCTACTCCAAATTTGATCTCGGAAGTGCTAGATGTGAAACAGAAACTACATAAAATTGAATTGGAAATGTCTAAGCTTC AGTCAAAGCAAGTTGAGATGGAGAAAGATGGAAAGTCCAATTTACTGTCACGTTCTGATGGAAAAATTCATGCAGAAGAAGATACCAAGATGAGAACTGT GTTTGTGACAAATGTACATTTTGCAGCAACAAAAGAAGCTCTATCATTGTACTTTGCCAAGTGTGGAGTGGTTGAGAATGTAGTGATCTTGATTGACAAA ACCACTGGCCAGAGAAAGGGATCTGCTTATGTTGCCTTTGCTAGCAAGGATTCTGCTGAGAAAGCAGTGGCATTGAGTGGTGCAACATTTTTTTCTAGGA CTTTGAAAGTTTCAAGGAAGGCGGAATCAACATCTGCAATGGCCCAGCTTGCTGGGAAGCCATCTCGAGCACTATCATCTCGCATCAACAAGAAAGCTGT TGTCAAGATGCCGTATTCTTCCAGCTCCCATCTGCAATGGAGGAGAGATTCTTCCACATCAGAGCCATCAGCTTCAGCCAATGAAGAGTAA
AA sequence Show only first row Show all	>Potri.012G145050.1 pacid=42784276 polypeptide=Potri.012G145050.1.p locus=Potri.012G145050 ID=Potri.012G145050.1.v4.1 annot-version=v4.1 MIKEDSKATPNLISEVLDVKQKLHKIELEMSKLQSKQVEMEKDGKSNLLSRSDGKIHAEEDTKMRTVFVTNVHFAATKEALSLYFAKCGVVENVVILIDK TTGQRKGSAYVAFASKDSAEKAVALSGATFFSRTLKVSRKAESTSAMAQLAGKPSRALSSRINKKAVVKMPYSSSSHLQWRRDSSTSEPSASANEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145050 [exp]	0	1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	2.44	0.8444
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	2.44	0.8066
AT1G77310			unknown protein		Potri.005G067800 [exp]	4.89	0.8013
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	7.07	0.8032
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.009G149600 [exp]	8.00	0.8002
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	8.12	0.8501
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	9.53	0.7756
AT5G01660			unknown protein		Potri.016G127600 [exp]	17.23	0.7243
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	17.32	0.7770
AT3G15280			unknown protein		Potri.001G398300 [exp]	22.22	0.7297

Compare expression of checked genes

Potri.012G145050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.