Plant FIBer expression Database

Potri.012G145100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24350 73 / 9e-14 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
AT3G12640 56 / 2e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G063800
[exp]
60 / 1e-09 AT3G12640 418 / 6e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Potri.001G269200
[exp]
60 / 2e-09 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Potri.006G079800
[exp]
58 / 5e-09 AT2G24350 102 / 8e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037701
[exp]
61 / 1e-09 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Lus10015696
[exp]
58 / 6e-09 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01480 PWI PWI domain
Representative CDS sequence
>Potri.012G145100.3 pacid=42783465 polypeptide=Potri.012G145100.3.p locus=Potri.012G145100 ID=Potri.012G145100.3.v4.1 annot-version=v4.1
ATGGGTGGAATCGGCGTAATATCGGCACAAGATGATGATGCAGCAGCTTCAACTTCATTCAAGTTGAAGAGAAAGTCAGCATTGGCTTCCAAGCTTAAAT
CTTCCATTTCCAAACATCTCCGTCACTCTTACTCCCACGACCGTGTCCTTGCTGAGTATATTACAGTGCTTGTTTGTAATGGGAAGAATCAAGAGCAGGC
CAGACACGATCTCGAAGCATTTCTTGGTCAAAGGACTCAGGAGTTTGTTTCTTGGTTGTGGGATCTTCTTTTGAAATATGTCTATCAGTCCAACAAGGAT
ATTTGTTTATTATCAGATGCAAAGAATGTCAATATCACCACTCCATGCGCTAAGGATTCCAAGATCAACAAATTAAAGGACTTTCAGAGTCATGGCCATG
ATAGTAGCACTATGGATGCTTTTGTGATCAAAGATGATCAGATGCGCCAGTTGCCAACTAATTCTGATCCTAACTTCTGTAATGTCAATCACGGTCAACT
TGCTGAAGACTTTGAACAAGTTCAAAGTTTTTCTTCTCCATCATCTGAGATCAATTCAAAAAAAGTATTGTCACGGTCTTGCAAGACTGAGCGTCACGGA
AAGATTGGTGCTTCTGAGAATGTTCTTTATAATTCCTTGGCAAATGAATCTTTGAGGAAAGAAAGCTCTTCCAATGCAAAGCAAAATTCTCAGTGTGTTG
ATAAAGCAACGAAGCAGATCGTCCCTGGTAGCTGCAACATGCTATTTAATCAGCTTATACCCAGAAGGGAACCAGCTTTTAGAAATCCACAACCCTCCAC
ATCAGGAAAATGTCTTTTGCCAAGATCTGTTCATGCGGAGTCCCACCAGAAGGAAAAACATTGTATTAGTGTTTGGGATAGATTGGGAAAGCCATGTGAT
GGTGTACCTTCAGGGGTCAAAACTGTTGAGTTGTGTGATGGTTCAGGTACAGTGTATCTAAAGCAGGAATTGCTTAACCAACACAAAGCAGTGCTTCCTG
TTTTAAATAGTGAACTTAGAGGGAGTATGACTGGAGGAGTTACTGGCCGTGGTAACATCCAGCCTGAGAGCAGGAAATTGGAGAGACCAACGAGAACGAT
GCATGAAGCTCATGCTGCAAATAATATTAGATGA
AA sequence
>Potri.012G145100.3 pacid=42783465 polypeptide=Potri.012G145100.3.p locus=Potri.012G145100 ID=Potri.012G145100.3.v4.1 annot-version=v4.1
MGGIGVISAQDDDAAASTSFKLKRKSALASKLKSSISKHLRHSYSHDRVLAEYITVLVCNGKNQEQARHDLEAFLGQRTQEFVSWLWDLLLKYVYQSNKD
ICLLSDAKNVNITTPCAKDSKINKLKDFQSHGHDSSTMDAFVIKDDQMRQLPTNSDPNFCNVNHGQLAEDFEQVQSFSSPSSEINSKKVLSRSCKTERHG
KIGASENVLYNSLANESLRKESSSNAKQNSQCVDKATKQIVPGSCNMLFNQLIPRREPAFRNPQPSTSGKCLLPRSVHAESHQKEKHCISVWDRLGKPCD
GVPSGVKTVELCDGSGTVYLKQELLNQHKAVLPVLNSELRGSMTGGVTGRGNIQPESRKLERPTRTMHEAHAANNIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24350 RNA binding (RRM/RBD/RNP motif... Potri.012G145100
[exp]
0 1
AT5G35390 Leucine-rich repeat protein ki... Potri.018G147300
[exp]
2.44 0.9177
AT3G10030 Trihelix aspartate/glutamate/uridylate ... Potri.006G117300
[exp]
2.64 0.8908
AT2G34780 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, materna... Potri.001G463700
[exp]
4.00 0.8695
AT2G19170 SLP3 subtilisin-like serine proteas... Potri.001G151100
[exp]
5.00 0.8964
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Potri.013G006000
[exp]
6.48 0.8912 MOM.2,1
AT3G08800 SIEL SHORT-ROOT interacting embryon... Potri.016G127500
[exp]
7.41 0.8752
AT2G24350 RNA binding (RRM/RBD/RNP motif... Potri.012G145050
[exp]
8.12 0.8501
AT2G01130 DEA(D/H)-box RNA helicase fami... Potri.010G117800
[exp]
10.95 0.8712
AT3G62900 CW-type Zinc Finger (.1) Potri.005G028700
[exp]
12.36 0.8682
AT1G28300 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like... Potri.004G045800
[exp]
14.28 0.9096

Potri.012G145100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.