Plant FIBer expression Database

Potri.012G145200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37010 212 / 3e-59 unknown protein
AT1G65710 99 / 1e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G147900
[exp]
847 / 0 AT5G37010 195 / 3e-53 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020782
[exp]
213 / 6e-60 AT5G37010 191 / 1e-52 unknown protein
Lus10031372
[exp]
193 / 1e-54 AT5G37010 171 / 2e-47 unknown protein
Lus10010952
[exp]
181 / 2e-48 AT1G65710 232 / 1e-67 unknown protein
Lus10007363
[exp]
159 / 8e-41 AT5G37010 167 / 2e-44 unknown protein
Lus10031373
[exp]
59 / 7e-10 AT1G65710 96 / 2e-23 unknown protein
PFAM info
Representative CDS sequence
>Potri.012G145200.1 pacid=42783623 polypeptide=Potri.012G145200.1.p locus=Potri.012G145200 ID=Potri.012G145200.1.v4.1 annot-version=v4.1
ATGGGTGCTTGTTTTAGCAAGAAAAAAAATGAAGTTTCCTCTTCTCCTTCTTTGAAAGCAGCTGCGGCTCCTGCTTCACAACCAGTTCTAAATCACCCAC
ATAATAATAACAATGCCACTCTCAAAGTAGATCAGAAGAATGAGATCACAATCAAGAACAAGATAGTGGAGCAAAAGGAGGTGGTCAACAAACAAGTCGT
AGAAGAAGAGGAAGAAGAAGACAGCTTACTCAAGAAAGAAATTTTTGTCATCAAACACAGGAAAAGCCATGATAGAGACAAACGCATCCCTCCTCCCAAC
GACGATGGTCCTGCTGCCAACGCTAATGCATCTGCTGCTGCTGCTGGTGAAATATTATTGGCCAACAGCAACACCAATGCTGGTGTTAATAATATGGTTG
TCAGAACATCAAGCTGCACAAAAGAAGAGGTAGATGCCATTCTCATACAGTGTGGAAGGCTTAGTCGCAGCAACTCCTCTGGAGCTGGAAAGCCTCTTTC
TTCTGGCAGAAAGTATTCTGGCTCCAAGAGGAGTTATGACTTTGATAATAATAATGACCAGGACCAAGATGTCAAGCCTGCCACTTCTGCCGATTATGAT
TCTAGAAGGAAGGGCAATGACGACGACGAGGGTGAGGTTACAGCGGAGAGAAGGCAGCATCGCCAACGCCACCGCCAACGCCAATCCAGCAGGCCTTCTG
CTTCTCCTTCTGCTCAAGGGAGGAGAAGGACACCCAGCAGGGAAAGAGACCAGAACCAGCGCTCCGGAAGCAGAGAGAGGGCCAGTGGTAGCAGTGGGAG
AAGGGTGAGTCGATCACCGGGTAGAAGATCAGAAATAGCCCAAAATACAAGCATTACTCCTGGAAATCTTAATGCTACTATTCCTGCTAACAATACTGGT
GGTACTGGTAATAGGCCTGGAAAAATGGTATCAGTCCCTGCCACTGTTTCTTCTTTAGTGATGGATAAAAGCAACAACATTGGAGTTGAACCGCAAGCTA
CAGCTGGAACTAAGCGCATCTCGGTGAAGAGAAATGTTGGTGAGGCAGCGGTGGCAGGCTCCAGGACAGCTGCATCCCCACGCTCCCAATCTCCTGCCAG
AGCCAATGCTAAGACTTCTAATGAGAATAATCAGCAGCCATGTCTTAGCCGCAGCAATTCAAGAAAAGCAGACCAATCTCCTTACAGAAGAAACCCATTA
AGTGAAATTGACCCCAATTCATTACAGCATTCACAACCATCTGGCAACAAGGCTACCTGCACCAGCAACAACAGATCACAAATCAGAAACAAAGATATTG
AAGGACAAGCGGTGGCCAAGGAAACTTTCAATCCTCTGAATCAGACTCCAATGAAGAAGCAAAATTCTGAGAAAAACAACAGAGTCAATGTTCAAGTGGC
AAATTACAGATGCAGTAGCATGGCTTCACTGGAAAACAAGCTTTCAAAGGAACAACAAATGGAAGAGGCCAAAGGACATCCACCAGTCACGACCAATGTG
GTAGACTTGGGAGGTGAAAGCTTGAAGCCCCAAGCATTAACCAGAAGCAGGTCGGCAAGGCGATCGCGAGACCTGGACCTCAATCCTGAAACTTTATTGA
ATCCAACTCCATCATATACCGCACTATTGCTGGAAGACATTCAAAATTTTCACCAGAAGAACACTCCTCCTTCCTTTTCACTCCCAGCTTGTGTCACCAA
GGCCTGCTCCATTCTTGAAGCGGTCGCAGACCTCAATTCCACTACAAGCTCCAACCTGTCATGTGCCTTCTCTGATGATAGAATAAGCCCCCCTGCAGTG
GCTGCTGTTAATCTTGTTGGGAAGAAACTACCTGAGGCAAAAGACCCATTTGTAGAATCTGAGATAATTGCAAGTGATGATCTTATGGAGCCAAGCTTTC
ACAAGTATGTAACCGTGAGAAGAGGAGGAGGTACATTGTGCGGGGAAGACATGGATGGTCAAGAATCCTCAGGAAGTAACAGCTTTGTTGGTGGCAGCCA
ACAGCATTTAGGATTGTCTACCTCTTCATGGGAACCCAATTCAGCTGATTCAACCGATCGCTGGTCTTCAAGATCCAACACGAGAGATGAGGATGACAAG
AGTCCTCTGGGATATCAAAAGCATGGATTACCTGAAACAGGGCGTGACGTGGAACAGGCCAGGAGAGCATTCAGTGGACAAAGGACTGGAATTGGACGTG
GGAGACATGGTACAAGTAAAAATGCTCACACAACTCCTATCCTTGCAACTGCTACTCAAACGTAA
AA sequence
>Potri.012G145200.1 pacid=42783623 polypeptide=Potri.012G145200.1.p locus=Potri.012G145200 ID=Potri.012G145200.1.v4.1 annot-version=v4.1
MGACFSKKKNEVSSSPSLKAAAAPASQPVLNHPHNNNNATLKVDQKNEITIKNKIVEQKEVVNKQVVEEEEEEDSLLKKEIFVIKHRKSHDRDKRIPPPN
DDGPAANANASAAAAGEILLANSNTNAGVNNMVVRTSSCTKEEVDAILIQCGRLSRSNSSGAGKPLSSGRKYSGSKRSYDFDNNNDQDQDVKPATSADYD
SRRKGNDDDEGEVTAERRQHRQRHRQRQSSRPSASPSAQGRRRTPSRERDQNQRSGSRERASGSSGRRVSRSPGRRSEIAQNTSITPGNLNATIPANNTG
GTGNRPGKMVSVPATVSSLVMDKSNNIGVEPQATAGTKRISVKRNVGEAAVAGSRTAASPRSQSPARANAKTSNENNQQPCLSRSNSRKADQSPYRRNPL
SEIDPNSLQHSQPSGNKATCTSNNRSQIRNKDIEGQAVAKETFNPLNQTPMKKQNSEKNNRVNVQVANYRCSSMASLENKLSKEQQMEEAKGHPPVTTNV
VDLGGESLKPQALTRSRSARRSRDLDLNPETLLNPTPSYTALLLEDIQNFHQKNTPPSFSLPACVTKACSILEAVADLNSTTSSNLSCAFSDDRISPPAV
AAVNLVGKKLPEAKDPFVESEIIASDDLMEPSFHKYVTVRRGGGTLCGEDMDGQESSGSNSFVGGSQQHLGLSTSSWEPNSADSTDRWSSRSNTRDEDDK
SPLGYQKHGLPETGRDVEQARRAFSGQRTGIGRGRHGTSKNAHTTPILATATQT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G37010 unknown protein Potri.012G145200
[exp]
0 1
AT4G17000 unknown protein Potri.009G081900
[exp]
2.23 0.9723
AT2G33560 BUBR1 BUB1-related (BUB1: budding un... Potri.005G258300
[exp]
3.16 0.9692
AT1G18550 ATP binding microtubule motor ... Potri.012G058400
[exp]
6.32 0.9645
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Potri.001G093700
[exp]
6.70 0.9574
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Potri.016G033000
[exp]
7.34 0.9658
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Potri.002G080000
[exp]
8.83 0.9639
AT3G03130 unknown protein Potri.013G081600
[exp]
8.94 0.9622
AT4G14960 TUA6 Tubulin/FtsZ family protein (.... Potri.017G081000
[exp]
9.94 0.9593
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Potri.014G155900
[exp]
9.94 0.9609
AT3G27350 unknown protein Potri.001G336300
[exp]
10.58 0.9577

Potri.012G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.