Plant FIBer expression Database

Potri.012G145300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02690 439 / 4e-152 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031371
[exp]
419 / 1e-144 AT3G02690 440 / 3e-153 nodulin MtN21 /EamA-like transporter family protein (.1)
Lus10010953
[exp]
409 / 9e-140 AT3G02690 423 / 5e-146 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF00892 EamA EamA-like transporter family
Representative CDS sequence
>Potri.012G145300.1 pacid=42783716 polypeptide=Potri.012G145300.1.p locus=Potri.012G145300 ID=Potri.012G145300.1.v4.1 annot-version=v4.1
ATGGAGGGAAGCTTGAGCTTGTTTTCTGCATCTTCTTTGACCAACTGCTCTATCCTCCTCCCTACTGCCTCTGCCTCTGCCTCTGCTTCTCTTTCCTTAT
CTCATCCTCATTTCTCTTATGATTATCCCCTTAAATTTCCTCATCTTTCACAGCGTGCGTCTCCAAATCATGCTCTCAGTTTTCCATTCTCACCTTCTTC
TTCTTCTTCTTCTTCTACTACTACTACTACTTGTCAAAGAAGCAGAAGCAGAAGCAGACATGCCAACTTCATTTCCAAGTGCTCCACACGCAGTAGTAGA
AAGGCTGAATTGGAATTCGAATCATCATCATCACAACCTGTAGATGATGGTGGTGATCTTGATTGCGTGGGGACAGGCCTTGACTCGGAGTGCCTTGTAT
CCGAACCCAACCTCGACGCTCCACTCATCCAATTGTCGTCAACAGAAAAGGGAGAAACAGCAACTGAAAGCTTAATTGAAACGATAACGGAGACTGCAGT
GCTGGTCTCTCCCTTCTTCTTTTGGGGCACTTCTATGGTGGCAATGAAGGAGGTTTTGCCCCTCACTGGCCCTTTCTTTGTCTCTTCCTTTCGCCTCATT
CCAGCTGGCTTGCTTTTGGTTGCCTTTGCTGGATTCAAAGGGAGGCCTCTGCCTTCTGGACTCACTGCTTGGCTCACCATCACTCTCTTTGCCCTTGTTG
ATGCCTCCTGTTTTCAGGGGTTTCTTGCTCAAGGATTGCAGAGGACTTCTGCTGGTTTGGGTAGTGTCATAATCGACTCGCAACCTCTGACAGTGGCTAT
ACTTGCTAACTTGTTATTTGGTGAGTCCATTGGGATCGTTGGAGCTTCAGGCCTTGTGCTTGGTGTCATAGGCCTTTTACTTCTTGAGGTACCTACTCTG
ACATTTGATGAAAGCAATTTTTCCCTGTGGGGAAGTGGAGAATGGTGGATGCTTCTTGCTGCTCAGAGCATGGCAGTTGGCACGGTCATGGTTCGATGGG
TTTCAAAGTACTCCGATCCTGTTATGGCAACTGGATGGCATATGGTTATCGGTGGTCTCCCTCTTCTTGCGATCTCTGTTCTCAACCATGATCCTGCCTT
CAATTTGAGTCTCAAGGACCTGACAGCAAGTGATATATTGGCACTACTTTATACCTCTATTTTTGGAAGTGCCATTAGTTATGGAGTGTACTTCTACAGT
GCAACAAAAGGTAGCTTGACAAAGCTCAGTTCCCTCACATTCCTAACCCCAATGTTTGCTTCAATTTTTGGGTTTCTATATCTTGGGGAAACTTTCTCCC
CCTTGCAACTGGCTGGGGCCATTGTTACTGTGGTTGCAATATATATGGTTAATTATCGGAACAGTAATGAGTGA
AA sequence
>Potri.012G145300.1 pacid=42783716 polypeptide=Potri.012G145300.1.p locus=Potri.012G145300 ID=Potri.012G145300.1.v4.1 annot-version=v4.1
MEGSLSLFSASSLTNCSILLPTASASASASLSLSHPHFSYDYPLKFPHLSQRASPNHALSFPFSPSSSSSSSTTTTTCQRSRSRSRHANFISKCSTRSSR
KAELEFESSSSQPVDDGGDLDCVGTGLDSECLVSEPNLDAPLIQLSSTEKGETATESLIETITETAVLVSPFFFWGTSMVAMKEVLPLTGPFFVSSFRLI
PAGLLLVAFAGFKGRPLPSGLTAWLTITLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLTVAILANLLFGESIGIVGASGLVLGVIGLLLLEVPTL
TFDESNFSLWGSGEWWMLLAAQSMAVGTVMVRWVSKYSDPVMATGWHMVIGGLPLLAISVLNHDPAFNLSLKDLTASDILALLYTSIFGSAISYGVYFYS
ATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPLQLAGAIVTVVAIYMVNYRNSNE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02690 nodulin MtN21 /EamA-like trans... Potri.012G145300
[exp]
0 1
AT1G12800 Nucleic acid-binding, OB-fold-... Potri.003G124200
[exp]
1.00 0.9801
AT2G36990 SIG6, SIGF, ATS... SIGMA FACTOR 6, RNApolymerase ... Potri.006G125700
[exp]
2.82 0.9691 SIGF.1
AT5G39830 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family... Potri.004G129200
[exp]
6.70 0.9661
AT3G06980 DEA(D/H)-box RNA helicase fami... Potri.010G004700
[exp]
6.92 0.9656
AT3G11210 SGNH hydrolase-type esterase s... Potri.006G100300
[exp]
6.92 0.9670 CPRD49.3
AT1G04620 HCAR 7-hydroxymethyl chlorophyll a ... Potri.010G062300
[exp]
7.21 0.9397
AT5G54290 CcdA cytochrome c biogenesis protei... Potri.001G406700
[exp]
7.74 0.9552
AT5G38520 alpha/beta-Hydrolases superfam... Potri.019G063900
[exp]
10.58 0.9642
AT4G31390 Protein kinase superfamily pro... Potri.006G275600
[exp]
10.95 0.9593
AT5G26742 EMB1138 embryo defective 1138, DEAD bo... Potri.005G000500
[exp]
12.96 0.9661

Potri.012G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.