Plant FIBer expression Database

Potri.012G145600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07780 332 / 5e-115 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
AT5G05590 332 / 8e-115 PAI2 phosphoribosylanthranilate isomerase 2 (.1.2)
AT1G29410 211 / 4e-68 PAI3 phosphoribosylanthranilate isomerase 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G069500
[exp]
469 / 4e-169 AT1G07780 340 / 3e-118 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
Potri.014G188400
[exp]
181 / 1e-57 AT5G05590 152 / 9e-47 phosphoribosylanthranilate isomerase 2 (.1.2)
Potri.014G188082
[exp]
66 / 2e-14 ND /
Potri.007G117700
[exp]
50 / 8e-07 AT1G31817 154 / 2e-44 NUCLEAR FUSION DEFECTIVE 3, Ribosomal L18p/L5e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007494
[exp]
334 / 7e-116 AT1G07780 342 / 3e-119 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
Lus10028971
[exp]
316 / 2e-108 AT1G07780 341 / 2e-118 TRANSIENT RECEPTOR POTENTIAL 6, phosphoribosylanthranilate isomerase 1 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00697 PRAI N-(5'phosphoribosyl)anthranilate (PRA) isomerase
Representative CDS sequence
>Potri.012G145600.1 pacid=42784208 polypeptide=Potri.012G145600.1.p locus=Potri.012G145600 ID=Potri.012G145600.1.v4.1 annot-version=v4.1
ATGCAATCTTTATCTTCCCTTCGAAGCGCCCTTTGTTCTATTCCTGCTTCATTTCCTCTTCCTTCTCATGGAACTTTCAACTCCATATCCAGACACGCCG
CCTCTCCAGGTCTAGTTGGGAGTGAACTGAACTTCTCGAGAACTACATTTCATCCAAGGAGTAAGGTTAATTGCATTTCCACCCCATCAGAGAAAGCTGC
CTTTACTCATGAAGATCATGAAAAAAAGTGCCCTTTGGTTAAAATGTGTGGGATTACCTCAGCTCGAGATGCTGTGATGGCAGCAGAAGCTGGTGCTAAT
TTTATTGGGATGATTCTTTGGCCCAACTCAAAATGTTCCATTTCGCTTTCAGTTGCAAAGGAAATTTCGAAAGTTGCAAGAGAATATGAAGCAGCTCCGG
TAGGGGTGTTTGTGGATGATGATGCAGACAAGATATTGAGAGCTGCGGATGCAGCAGACCTTGAATTTGTGCAGCTTCATGGGAAAGGTTCACGGGCAGC
TTTTCTGGATTTAAAGGGAAAAAATCAAATAGTGTATGTTCTCCATGCAAATGAGAATGGAAACCTTCTAAATCAAATTTCAGATGAAGAATGTTCCTTG
GTTGATTGGATTCTCGTGGATAGCGCAACAGGTGGCAGTGGCAAAGGATTTAACTGGACGCATTTTGAATTACCACCAATCAAAAGCAAGAATGGATGGC
TCTTGGCGGGAGGGATTAAGCCTGAAAACGTTAGTGAAGCTGTTTCTCTCCTCAAACCTCACGGTGTTGATGTTAGTAGTGGTATTTGTGGCTCAGATGG
CATTAATAAGGATCAATCACGAATAGTGTCCTTTATGAATGCAGTACATTCTGTACGCTATTGA
AA sequence
>Potri.012G145600.1 pacid=42784208 polypeptide=Potri.012G145600.1.p locus=Potri.012G145600 ID=Potri.012G145600.1.v4.1 annot-version=v4.1
MQSLSSLRSALCSIPASFPLPSHGTFNSISRHAASPGLVGSELNFSRTTFHPRSKVNCISTPSEKAAFTHEDHEKKCPLVKMCGITSARDAVMAAEAGAN
FIGMILWPNSKCSISLSVAKEISKVAREYEAAPVGVFVDDDADKILRAADAADLEFVQLHGKGSRAAFLDLKGKNQIVYVLHANENGNLLNQISDEECSL
VDWILVDSATGGSGKGFNWTHFELPPIKSKNGWLLAGGIKPENVSEAVSLLKPHGVDVSSGICGSDGINKDQSRIVSFMNAVHSVRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G07780 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6... Potri.012G145600
[exp]
0 1
AT4G17600 LIL3:1 Chlorophyll A-B binding family... Potri.003G083500
[exp]
1.00 0.9311 LIL3.2,Lil3_2
AT4G23660 ATPPT1 polyprenyltransferase 1 (.1.2.... Potri.005G093600
[exp]
2.00 0.9219
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.007G085000
[exp]
4.89 0.9073
AT1G49510 EMB1273 embryo defective 1273 (.1) Potri.005G149500
[exp]
7.93 0.8934
AT2G17695 unknown protein Potri.005G105500
[exp]
9.16 0.8681
AT3G06050 PRXIIF, ATPRXII... peroxiredoxin IIF (.1) Potri.019G024000
[exp]
9.89 0.8977 PtrcPrxIIF,Pt-PRX.1
AT2G44050 COS1 coronatine insensitive1 suppre... Potri.007G146000
[exp]
10.90 0.8733
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Potri.001G229166
[exp]
13.60 0.8586
AT3G21300 RNA methyltransferase family p... Potri.001G195300
[exp]
17.32 0.8688
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.006G204900
[exp]
20.00 0.8845 PtrcPrx2cysB,Pt-BAS1.1

Potri.012G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.