Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40140 585 / 0 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G55980 555 / 0 C3HZnF ATSZF1 salt-inducible zinc finger 1 (.1) AT5G58620 540 / 0 C3HZnF zinc finger (CCCH-type) family protein (.1) AT2G41900 376 / 1e-120 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G12850 372 / 4e-119 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 183 / 3e-53 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G29190 181 / 7e-51 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 176 / 7e-50 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G19810 176 / 3e-49 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT1G03790 169 / 3e-46 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069400 [exp] 1144 / 0 AT2G40140 557 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.010G187900 [exp] 1087 / 0 AT2G40140 570 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.001G252600 [exp] 730 / 0 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G046800 [exp] 692 / 0 AT5G58620 553 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.016G053700 [exp] 417 / 4e-136 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.009G061000 [exp] 416 / 1e-135 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 412 / 1e-134 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 410 / 1e-133 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 401 / 2e-130 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028970 [exp] 823 / 0 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10007493 [exp] 801 / 0 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10019709 [exp] 369 / 4e-117 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10040662 [exp] 315 / 4e-101 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1) Lus10035006 [exp] 183 / 1e-51 AT2G19810 380 / 2e-131 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10012922 [exp] 181 / 1e-50 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10017708 [exp] 170 / 1e-47 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033665 [exp] 168 / 1e-46 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 159 / 3e-43 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018243 [exp] 119 / 2e-30 AT5G58620 100 / 3e-24 zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.012G145800.2 pacid=42782944 polypeptide=Potri.012G145800.2.p locus=Potri.012G145800 ID=Potri.012G145800.2.v4.1 annot-version=v4.1 ATGTTTATTTTAATGATGCAGGACTTGGTTAGGTGCAGAGGTTCACAGAGTGATTCTTTCTCATCAAATCCGATCATGGAAGACAAATCTTGCGGCCAGA AAGACAATCTCTTGTATAAATGCTCTGTTTTGCTTGAATTGTCTGCCTCTGATGATCTTGCTGGGTTCAAAATTGAGGTTGAACAGAAGGGTTTGGATAT CGATGGGGCAAACTATTGGTATGGTAGAAGAATTGGGTCGAAAAAGATGGGTTTTGAAGAGAGGACACCTCTTATGATTGCTGCCATGTTTGGATGCACT AATGTTTTGAAGTATATTATTGAAACTGGCAAAGTCAATGTCAATAGGGCGTGTGGCTCGGATAAGGTCACTGCCCTTCACTACGCTGTTGCTGGCTGTG TTGTTTCATCAGTTGGGATTGTCAAGCTCTTGCTTGATGCGTTTGCTGATCCTAACAGTGCTGATGCTAACGGAAATAAACCTGGTGATATATTTGCCAC TTCATCCAAGTGTATGTGCAATTCAAGGAAGAAGTTGATTGAGCTATTGCTAAAAGGCCAAAACTTAAGTGAAGATGAAGAAGAGAAACTGGTCATAATG CCTCAGTTGGCAAAAGAGGGAACTGAAAAGAAAGAGTATCCTCTTGATGTGACATTGCCAGACATAAACAATGGTATATATGGTACCGATGAGTTTAGAA TGTACTCTTTCAAGGTCAAGCCTTGCTCCAGGGCATACTCTCATGATTGGACTGAGTGCCCGTTTGTCCATCCAGGAGAGAATGCAAGGAGGAGAGACCC AAAGAAGTACCCTTACAGTTGTGTCCCTTGCCCTGAATTTCGTAAGGGAACATGCCAGAAGGGTGATTCTTGTGAATATGCACATGGTGTTTTTGAGTCA TGGCTGCACCCTGCCCAGTATCGAACCCGGCTTTGCAAGGATGAAACTGGTTGTGCACGAAAAGTTTGTTTCTTTGCACACAAACCTGAGGATTTACGTC CTGTGTACGCTTCTACAGGTTCAGCAATGACAACTTTGAGTCCATTGGCCCTTGGATCATCATCTTTTCCGTTGCCTGCTACACCAACACCACCAATGTC TCCCTTAGCGGTAGCCTCTTCTTCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAGGTTAGCCTTACCCAACCAGCTTTGCAGCTCCCAGGAAGTAGGCTA AAGACTGCTTTCTGTGCTAGAGATTTGAATTTGGAGATTGAATTGCTTGGGCTGGAAAATTACTCAAGCCAACTCCAGCAACAGCAACAGCAACTTAGGG GTGAGATCATTGAGATGTCTGGTCTCTCCTCACCATCTCACTGGAGCAATAGGATTGCGGATTTGAAACCTACCAACCTTGATGATGTTTTTGGATCTCT CGATCCTTCTCTAATGTCTCCACTGCAGGGAGTTTCATTAAATGCTAGCACACAAACCCAGTTACACTCTCCTAATGGGCTGCAGATCCGCCAGAACATG AACCAACTTCATTCAAGCTACCCAGCCGCCAATCTCTCATCTTCTCCAGCTAGGAACCCTAGTACATATGGGTTTGATACATCCACTGCAGTGGCAGCTG CTGTAATGAATTCAAGGTCCTCCGCATTTGCGAAGAGGAGCCAGAGTTTCATTGACCGTGGTGCAGTGCCCAACCATCTTGGCCTCACTGCAGCTGCTAA CTCTGTATCCACAATGCCCTCTAATCTTCCTGATTGGAGCTCCCCTAATGGGAAACTGGATTGGGGCTTTCAAGGAGATGAACTGAACAAGCTCAAGAAG TCTGCTTCCTTTGGATTTCAAAGCAGCAATAATCCTGCTGCGACAACAGCTGCTTACGTGACAGCTTCACATGTTGATGAGCCAGATGTTTCTTGGGTTA ATTCGTTGGTTAAAGATGTACCCCCTGCTGGAAGCACAATTTTTTATGCTGAGAAGCAATACAGTCTTGGTAAAAGAGTTTGTGAATCGCTGCCACCATG GATAGAGCAGATTTACTTGGAACAGGAGCAGATGGTGGCATAG
AA sequence Show only first row Show all	>Potri.012G145800.2 pacid=42782944 polypeptide=Potri.012G145800.2.p locus=Potri.012G145800 ID=Potri.012G145800.2.v4.1 annot-version=v4.1 MFILMMQDLVRCRGSQSDSFSSNPIMEDKSCGQKDNLLYKCSVLLELSASDDLAGFKIEVEQKGLDIDGANYWYGRRIGSKKMGFEERTPLMIAAMFGCT NVLKYIIETGKVNVNRACGSDKVTALHYAVAGCVVSSVGIVKLLLDAFADPNSADANGNKPGDIFATSSKCMCNSRKKLIELLLKGQNLSEDEEEKLVIM PQLAKEGTEKKEYPLDVTLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFES WLHPAQYRTRLCKDETGCARKVCFFAHKPEDLRPVYASTGSAMTTLSPLALGSSSFPLPATPTPPMSPLAVASSSPKSGSLWQNKVSLTQPALQLPGSRL KTAFCARDLNLEIELLGLENYSSQLQQQQQQLRGEIIEMSGLSSPSHWSNRIADLKPTNLDDVFGSLDPSLMSPLQGVSLNASTQTQLHSPNGLQIRQNM NQLHSSYPAANLSSSPARNPSTYGFDTSTAVAAAVMNSRSSAFAKRSQSFIDRGAVPNHLGLTAAANSVSTMPSNLPDWSSPNGKLDWGFQGDELNKLKK SASFGFQSSNNPAATTAAYVTASHVDEPDVSWVNSLVKDVPPAGSTIFYAEKQYSLGKRVCESLPPWIEQIYLEQEQMVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	0	1
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	3.00	0.9197
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	5.09	0.8508
AT2G46080			unknown protein		Potri.008G085600 [exp]	5.47	0.8826
AT2G41410			Calcium-binding EF-hand family...		Potri.006G043700 [exp]	5.91	0.8639
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.010G187900 [exp]	6.32	0.8923
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	6.32	0.8778
AT1G67920			unknown protein		Potri.010G107200 [exp]	7.74	0.8229
AT4G02040			unknown protein		Potri.008G198000 [exp]	8.48	0.8549
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136400 [exp]	11.48	0.8670
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.014G017300 [exp]	13.60	0.8678	SCOF.2

Compare expression of checked genes

Potri.012G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.