Plant FIBer expression Database

Potri.013G000200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G001100
[exp]
94 / 4e-24 AT5G26720 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G000200.2 pacid=42812765 polypeptide=Potri.013G000200.2.p locus=Potri.013G000200 ID=Potri.013G000200.2.v4.1 annot-version=v4.1
ATGTTTCTGTCAGATAGGCTGAATATTTCCAATGATATTATTGTTGATAATTATAAGGAAGATGACGATGTTATTGAGGATGAACATGGCAATCCAGGCA
ATGGGTCTGATGCCCTCCCTACTGCCAACAAGAAGAAGAGCAACAAGAAGCCTATGATGATGCTGATGCTGCAGAAGAAGAAGAAAAAGAATAAGAAGAA
AGAGAACATTCCTCTCAGAGAATCATGCGATGGTTCTGCAAGTAGTAAAAACATTAATTTCTCCAAACCAAACAAAGTGGTCCTCTTTCCCTTCATTAAG
CCCAACAGACTTTTCCATAAAAAAAGCACTCCTGCTGCTGCTAGTAATGCTGATTGTTTTCCAGGTAACACTAGTACTAGTTGTTTTTGTTTTAAGCAAC
CCCCTACCTTGGAACCTTCTTCAACATCAACAACCCTCCAGTCTCAAACAAGCGACCCTAATCATCCTGACTTCACCTTCGACATGTTGAAATCTTTGAT
TGAGACCAATGATTTCTATTCCAAAGAATGCAACCCCCATTCTTTAGATACTACTGCTACTACTTTATGA
AA sequence
>Potri.013G000200.2 pacid=42812765 polypeptide=Potri.013G000200.2.p locus=Potri.013G000200 ID=Potri.013G000200.2.v4.1 annot-version=v4.1
MFLSDRLNISNDIIVDNYKEDDDVIEDEHGNPGNGSDALPTANKKKSNKKPMMMLMLQKKKKKNKKKENIPLRESCDGSASSKNINFSKPNKVVLFPFIK
PNRLFHKKSTPAAASNADCFPGNTSTSCFCFKQPPTLEPSSTSTTLQSQTSDPNHPDFTFDMLKSLIETNDFYSKECNPHSLDTTATTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26720 unknown protein Potri.013G000200
[exp]
0 1
AT1G04560 AWPM-19-like family protein (.... Potri.010G064200
[exp]
5.47 0.7485
AT1G07900 AS2 LBD1 LOB domain-containing protein ... Potri.008G043900
[exp]
12.24 0.7144
AT1G73920 alpha/beta-Hydrolases superfam... Potri.012G060600
[exp]
12.40 0.6248
AT5G52390 PAR1 protein (.1) Potri.012G141800
[exp]
15.49 0.6997
AT5G24080 Protein kinase superfamily pro... Potri.012G034901
[exp]
17.60 0.7030
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Potri.011G041600
[exp]
23.66 0.7102
AT5G35430 Tetratricopeptide repeat (TPR)... Potri.006G065600
[exp]
29.10 0.5714
AT4G18170 WRKY ATWRKY28, WRKY2... WRKY DNA-binding protein 28 (.... Potri.005G203200
[exp]
43.95 0.6554
AT1G58200 MSL3 MSCS-like 3 (.1.2) Potri.002G105900
[exp]
48.55 0.6703
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Potri.009G081400
[exp]
58.48 0.6282

Potri.013G000200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.