Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PHYC.1,phya
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09570 1806 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT5G35840 1114 / 0 PHYC phytochrome C (.1) AT2G18790 1106 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1095 / 0 PHYD phytochrome D (.1) AT4G18130 981 / 0 PHYE phytochrome E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105200 [exp] 1165 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 1139 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.014G164700 [exp] 55 / 3e-07 AT5G35750 1359 / 0.0 histidine kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007594 [exp] 1764 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012151 [exp] 1758 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10006389 [exp] 1148 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10037771 [exp] 1143 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1137 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10012342 [exp] 1086 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10011967 [exp] 1009 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10004593 [exp] 382 / 4e-122 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10006388 [exp] 327 / 3e-101 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004592 [exp] 186 / 1e-51 AT4G18130 321 / 1e-100 phytochrome E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF00360 [poplar] [flax] PHY Phytochrome region CL0183 [poplar] [flax] PAS_Fold PF00989 [poplar] [flax] PAS PAS fold CL0161 [poplar] [flax] GAF PF01590 [poplar] [flax] GAF GAF domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [poplar] [flax] PAS_Fold PF08446 [poplar] [flax] PAS_2 PAS fold
Representative CDS sequence Show only first row Show all	>Potri.013G000300.2 pacid=42811827 polypeptide=Potri.013G000300.2.p locus=Potri.013G000300 ID=Potri.013G000300.2.v4.1 annot-version=v4.1 ATGTCTTCTTCAAGGCCAAGCCACTCATCCAGCAATTCAGCAAGATCAAGACACAGTGCTAGGATTATTGCTCAGACCACTGTGGATGCCAAGCTCCATG CTGATTTTGAGGAGTCAGGCAGCTCTTTTGATTACTCAAGCTCAGTGCGTGTTACTGACTCAGTTGGTGGAGATCAGCCACCCAGGTCTGACAAAGTAAC TACAACTTATCTTCACCACATCCAGAAAGGCAAGCTGATCCAGCCTTTTGGATGCTTGCTAGCCTTAGATGAGAAAACTTTCAAAGTCGTTGCATACAGT GAGAATGCCCCTGAACTGTTGACTATGGTCAGTCATGCAGTGCCAAGTGTTGGGGAACATCCTGTTCTTGGCATTGGAACTGACATCAGGACTATCTTCA CTGCTCCTAGTGCATCTGCCTTGCAAAAAGCCATGGGATTCGGGGATGTTTCTCTTTTGAATCCTATATTGGTCCATTGCAAGACTTCTGGGAAGCCGTT TTATGCCATTGTTCACCGGGTGACTGGCAGTTTGATCATTGACTTTGAACCTGTGAAGCCTTACGAGGTTCCCATGACTGCTGCTGGTGCTCTGCAATCA TACAAGCTTGCAGCCAAAGCGATTACTCGGCTGCAGTCTTTGCCTAGTGGAAGCATGGAAAGGCTTTGTGATACAATGGTTCAGGAGGTTTTTGAGCTCA CTGGATATGATAGGGCGATGGCCTATAAATTTCATGATGATGATCATGGAGAAGTGGTCTCTGAGGTTACAAAGCCAGGCATGGAGCCATATTTGGGTTT GCACTATCCAGCCACTGATATCCCTCAGGCTTCACGCTTTCTATTTATGAAGAATAAAGTTCGAATGATTGTTGATTGTCATGCGAAACATGTCAAGGTG CTTCAGGATGAGAAGCTTCCATTTGATCTGACATTGTGTGGTTCAACCCTGAGGGCCCCACACAGTTGTCATTTACAATACATGGAGAACATGAACTCCA TCGCTTCTCTGGTTATGGCAGTTGTAGTCAATGATGGGGATGAAGATGGTGATACCCCTGATTCTGTGAACCCACAGAAAAGAAAGAGACTTTGGGGTTT AGTAGTGTGTCATAATACAAGTCCGAGGTTTGTTCCTTTCCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCTATCCATGTCAACAAGGAA TTGGAGTTAGAAAATCAAATTGTCGAGAAGAACATCCTCCGCACCCAGACACTCTTATGTGATATGCTCATGCGTGATGCACCATTGGGTATTGTGACAC AGAGCCCGAACATTATGGATCTGGTAAAGTGTGATGGTGCTGTCCTGTTCTATAGGAATAAGATATGGAGGTTGGGGATAACTCCAAGTGATCTGCAGCT TCAGGATATAGCTTTTTGGCTCTCCGAGTACCATATGGATTCTACAGGTTTGAGTACAGACAGCTTGTATGATGCAGGGTACCCAGGGGCTCTGGCTCTT GGTGATGTAGTTTGTGGAATGGCAGCTGTGAGAATAACTTCCAAGGACATGCTTTTTTGGTTTCGATCCCAGACTGCTGCAGAAATTCGATGGGGTGGTG CAAAGCATGAACCTGGGGAGAAGGATGATGGAAGGAGAATGCACCCTAGGTCATCTTTCAAGGCCTTCCTTGAAGTTGTCAAGACAAGGAGTTTGCCTTG GAAGGACTATGAAATGGATGCAATCCATTCTCTGCAGCTTATCCTGAGGAACGCATTCAAAGACATTGAAACCATGGATGTGGATACCAAAACAATTCAT GCAAGGCTAAGCGACCTCAAAATTGAAGGGATGCAAGAACTTGAAGCAGTTACTAGTGAGATGGTCCGTTTAATTGAAACAGCTACAGTGCCAATTTTGG CAGTTGATGTTGATGGTCTAGTTAACGGGTGGAATACAAAAATTTCTGAATTGACTGGTCTTCTTGTTGATAAAGCAATCGGGAAGCATTTGCTAACACT TGTGGAAGATTCTTCGGTTGACATAGTCAAAAGAATGTTATTCTTGGCATTGCAGGGCAAAGAAGAGCAAAACATACAATTTGAGATCAAGACACATGGT TCCAAGTCTGAATGTGGCCCCATCTGCTTAGTTGTTAATGCCTGTGCAAGCAGGGACCTTCATGAAAATGTTGTGGGGGTGTGCTTTGTGGGTCAAGATA TCACTGGCCAGAAGATGGTCATGGACAAGTTCACCCGGATTGAAGGGGATTACAAAGCAATTGTACAAAACCGAAACCCTTTGATTCCCCCAATATTTGG GACGGATGAGTTTGGCTGGTGTTCTGAGTGGAATCCTGCCATGACAAATTTGACTGGTTGGAAACGAGAAGAAGTTCTAGATAAAATGTTATTGGGAGAG GTTTTTGGGTTAAACATGGCATGCTGTCGTCTCAAGAACCAGGAGGCTTTTGTAAATCTTGGTGTTGTTCTTAATACTGCCATGACTGGCCAGGAATCCG AGAAGGTTTCTTTTGGTTTCTTTGCTCGGACTGGAAAGTATGTGGAATGCCTGCTGTGTGTGAGTAAGAAATTGGACAGAGAGGGTGCAGTCACTGGGGT ATTCTGCTTTCTACAGCTTGCAAGCCAAGAGCTGCAACAAGCACTTCATGTCCAGCGATTATCAGAGCAAACTGCTTTGAAAAGATTGAAAGCATTGGCT TATTTAAAAAGGCAGATCTGGAATCCTCTCTCTGGAATTATATTTTCTGGAAAAATGATGGAGGGAACCGAGTTGGGAGCAGAACAAAAGGAGCTTCTGC ATACCAGTGCCCAGTGCCAGTGCCAACTCAGCAAGATTCTTGATGACTCAGATCTAGATAGCATCATCGAAGGTTACTTGGATCTGGAAATGGTGGAGTT TACCCTGCGTGAGGTACTAGTGGCAGCTACCAGTCAAGTCATGATGAAGAGCAATGAAAAGGGCATTCGAATAATCAACGATGCAGCTGAAGAGACGATG GCTGAGACCCTGTATGGTGATAGCATCAGGCTTCAACAGGTGTTAGCTGATTTCTTGCAGATGTCAGTTAATTTTACACCATCTGGAGGCCTGCTTTCTG TTTCAGCTAGCTTAACCAAAGACCAGTTGGGGCAATCTGTTTATCTTGTGCATCTGGAACTCAGGATAAGGCATCCTGGTGCAGGGATTCCTGAAGCACT GCTAGATCAAATGTTTGGGGAGGATACAGATGCGTCTGTGGAGGGGATCAGCTTGGTTATAAGCAGGAAGCTGGTGAAGCTGATGAACGGAGATGTTCGG TACATGAGGGAAGCAGGGAAGTCGAGTTTTATCATATCAGTAGAACTTGCTGGTGGCCATAAATCGCAAAAAAGGGCATGA
AA sequence Show only first row Show all	>Potri.013G000300.2 pacid=42811827 polypeptide=Potri.013G000300.2.p locus=Potri.013G000300 ID=Potri.013G000300.2.v4.1 annot-version=v4.1 MSSSRPSHSSSNSARSRHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVVAYS ENAPELLTMVSHAVPSVGEHPVLGIGTDIRTIFTAPSASALQKAMGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQS YKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEVTKPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKV LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSVNPQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKE LELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPGALAL GDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDIETMDVDTKTIH ARLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLLTLVEDSSVDIVKRMLFLALQGKEEQNIQFEIKTHG SKSECGPICLVVNACASRDLHENVVGVCFVGQDITGQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDKMLLGE VFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALA YLKRQIWNPLSGIIFSGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLEMVEFTLREVLVAATSQVMMKSNEKGIRIINDAAEETM AETLYGDSIRLQQVLADFLQMSVNFTPSGGLLSVSASLTKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMFGEDTDASVEGISLVISRKLVKLMNGDVR YMREAGKSSFIISVELAGGHKSQKRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	0	1	PHYC.1,phya
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	3.00	0.8627	RGA3.1
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Potri.009G049200 [exp]	3.16	0.8490
AT3G08570			Phototropic-responsive NPH3 fa...		Potri.016G139900 [exp]	6.63	0.8344
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	7.74	0.8329
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.010G136100 [exp]	8.48	0.8076
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	8.94	0.8381
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154601 [exp]	9.21	0.8239
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	9.79	0.8467
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012601 [exp]	12.12	0.8198
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385500 [exp]	13.78	0.8354

Compare expression of checked genes

Potri.013G000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.