Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GER1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09560 311 / 1e-108 GLP5 germin-like protein 5 (.1) AT1G02335 300 / 1e-104 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G62020 300 / 3e-104 GLP10 germin-like protein 10 (.1.2) AT5G26700 264 / 4e-90 RmlC-like cupins superfamily protein (.1) AT3G05930 253 / 9e-86 GLP8 germin-like protein 8 (.1) AT1G18970 211 / 3e-69 GLP4 germin-like protein 4 (.1) AT1G18980 209 / 1e-68 RmlC-like cupins superfamily protein (.1) AT4G14630 196 / 3e-63 GLP9 germin-like protein 9 (.1) AT5G39120 193 / 3e-62 RmlC-like cupins superfamily protein (.1) AT5G39130 192 / 5e-62 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G001300 [exp] 380 / 4e-136 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.014G110400 [exp] 313 / 2e-109 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.002G184900 [exp] 310 / 2e-108 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.015G068200 [exp] 231 / 4e-77 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 210 / 8e-69 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 207 / 9e-68 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 206 / 3e-67 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 204 / 1e-66 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163216 [exp] 199 / 1e-64 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038014 [exp] 311 / 2e-108 AT3G62020 327 / 5e-115 germin-like protein 10 (.1.2) Lus10009254 [exp] 290 / 6e-100 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2) Lus10032016 [exp] 210 / 1e-68 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 209 / 3e-68 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10032015 [exp] 206 / 2e-67 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10032017 [exp] 207 / 1e-66 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10015128 [exp] 204 / 1e-66 AT3G05950 238 / 7e-80 RmlC-like cupins superfamily protein (.1) Lus10035186 [exp] 204 / 3e-66 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10026962 [exp] 204 / 3e-66 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 203 / 4e-66 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.013G000500.1 pacid=42810834 polypeptide=Potri.013G000500.1.p locus=Potri.013G000500 ID=Potri.013G000500.1.v4.1 annot-version=v4.1 ATGGCAGCCAAGGTGGCCCTACTTTTCTTGACTTTTTGTGTGGCATTCTTGGCCACCGGTTCTGCTGATCCTGACCTGCTTCAAGATGTTTGCGTTGCTG ATTTTGCTTCTGGAGTGAAGGTGAATGGTTTCACCTGCAAGGAAAACATAACAGCCGATGATTTCTTCTTCGCCGGGTTGGCTAAACCAGGTCTCACCAA CAACACATTCGGCTCCTTGGTCACTGCCGCCAATGTTCAGAAGATCCCAGGACTCAACACCTTGGGGGTCTCCATGGCCCGCATTGACTATGCCCCAGGT GGCTTGAACCCACCCCACACACATCCACGTGCCACTGAGATGGTCTTTGTCCTTGAAGGCCAACTTGATGTTGGGTTCATCACCACTGCAAACGTTTTGA TATCAAAGACCATCAAGGCGGGCGAGATATTTACTTTCCCGAAAGGATTGGTTCATTTTCAGAAGAACAATGGTCAGGTCCCAGCTGCAGTCATTGCTGC ATTCGGTAGCCAGTTGGCAGGAACTCAGTCAATTGGTGCCACATTGTTTGCCGCCCAACCACCGGTGCCTGACAATGTCTTGGCCAAGGCTTTCCAGGTT GGTACCAAGGAGGTCCAAAAGATCAAGTCTAGGTTCGCACCTAAGAAGTGA
AA sequence Show only first row Show all	>Potri.013G000500.1 pacid=42810834 polypeptide=Potri.013G000500.1.p locus=Potri.013G000500 ID=Potri.013G000500.1.v4.1 annot-version=v4.1 MAAKVALLFLTFCVAFLATGSADPDLLQDVCVADFASGVKVNGFTCKENITADDFFFAGLAKPGLTNNTFGSLVTAANVQKIPGLNTLGVSMARIDYAPG GLNPPHTHPRATEMVFVLEGQLDVGFITTANVLISKTIKAGEIFTFPKGLVHFQKNNGQVPAAVIAAFGSQLAGTQSIGATLFAAQPPVPDNVLAKAFQV GTKEVQKIKSRFAPKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.013G000500 [exp]	0	1	GER1.2
AT1G75090			DNA glycosylase superfamily pr...		Potri.002G133800 [exp]	4.47	0.8018
AT1G62510			Bifunctional inhibitor/lipid-t...		Potri.001G158400 [exp]	7.74	0.8440	Pt-HPS.2
AT2G44500			O-fucosyltransferase family pr...		Potri.009G022500 [exp]	9.00	0.7889
AT5G42250			Zinc-binding alcohol dehydroge...		Potri.002G013400 [exp]	13.78	0.8223
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	14.69	0.7513
AT5G45060			Disease resistance protein (TI...		Potri.013G037566 [exp]	26.32	0.7317
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.009G029600 [exp]	27.98	0.6765
AT1G80120			Protein of unknown function (D...		Potri.016G143500 [exp]	33.28	0.8158
AT2G44930			Plant protein of unknown funct...		Potri.005G007500 [exp]	34.05	0.7945
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	41.58	0.7197

Compare expression of checked genes

Potri.013G000500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.