Plant FIBer expression Database

Potri.013G000600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G57600 739 / 0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007951
[exp]
815 / 0 AT1G57600 762 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Lus10013485
[exp]
795 / 0 AT1G57600 748 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Potri.013G000600.1 pacid=42810894 polypeptide=Potri.013G000600.1.p locus=Potri.013G000600 ID=Potri.013G000600.1.v4.1 annot-version=v4.1
ATGGCAATATCATCAACAATGAAGAAGAAGAAGGAGAAGGAGGAATACTGGAAGCGCAAAGAGCTCGTCTTTCTGGTTCTCTATGCAATTGCTTTCTACG
CTTTCATCATCCATCGATCTCTTCAACTCTCTCTCGATCATGAATCAGAGCTTTATGCGTTACGCCCTGGATGGCTTCTCCCTCCTCGTCTCAATGATGT
TAGTGATGCCCAATGGAGAAATTTCCGTGCCAATTTGCCTATTCTTTCTCTTGTCTTTGCTCTTTTCGCCCTGCTTGCTAATTCTTTAAGGGCCCTTTTT
TCCTTGAAAGCTAAAGGAATGTCCTTTGTGTGGCTTCTCATTTCTTTGGCCTACCTCTCTTATCTTCACGGAGCTTGCGTTCTGTTTATCCTCTCAATTG
CTTCCCTGAATTTTCTCCTCGTGAAGATGTTTGCACAGACAAAGTATTTCTCTCCTGTGCTTTGGCTTTTCAACGTATTTTTTCTTCTGTGTAATCGTGT
TTATGAAGGATATTCGTTCTCCATTTTTGGGCAACAATGGGCATATTTGGACAACTATCGTGGAACTTTTAGATGGCACATTTGTTTTAATTTTGTTATT
TTGCGAATGATCAGCTTTGGATATGATTACCATTGGGCACATCAGGATCCTCTTTTTGATCAGCAGAAGCACATTCAACGTTGCCATACTTGTAAGTCTG
GAAAAACATGCTACCGGCTCTTGCAGGAGGGAAGTGTCCAGAAGGAGAAGTTTTCCCTTAGCATATACCTCGCCTATTTGGTATATGCCCCAGTTTATAT
TGCTGGCCCAATTATAAGCTTCAATGCCTTCGTCTCACAGTTAGATACGCCTCAGAATAATTATACAGTTAGGGATATGTCCTGGTATGGGTTACGTTGG
TTATTCAGCTTTTCTCTAATGGAATTAGTGACGCATCTATTTCGTTACAATGCTTTTGCAATCAGTCGTCTCTGGAAACTGCTATCTCCTATGGACATAT
TCATCATTGGATATGGGGTCTTGAATTTCATGTGGCTAAAATTCTCCCTTATCTGGCGCTATTTTCGATTCTGGTCACTGATATGTGGCATTGAGGCCCC
TGAGAATATGCCAAGGTGTATTAATAATTGCTGCAACTTGGAGAGCTTTTGGAAAAATTGGCATGCTTCGTACAATAAATGGCTTGTCAGATACATGTAT
ATTCCTCTTGGAGGATCTCAGAGAAAGCTACTCAACATATGGGTTATATTCACATTTGTTGCCATCTGGCATGATCTAGAATGGAAACTTCTTTCATGGG
CATGGTTAACATGTTTATTCTTTATCCCTGAAATGGTGGTGAAATCAGCAGCGAATACATTACAGGTGGAGGGTGCTTTTGGGGAGTTTCTTTTCCGAGA
AATTAGTGCAGCTGGTGGTGCCATCACCATTACATGTCTCATGGTGGCAAACCTTGTTGGGTATGTAATTGGGCCATCAGGCTTTAACTGGCTGTTTGCA
CAATTTCTTTCAAGACAAGGATTGCCAGTAATGGGTGGTATGTTTATAACGTTTTACGTTGGGACAAAGCTTATGTTCCACATTGATGATGCCAAGCAAA
GGAAGCACTAA
AA sequence
>Potri.013G000600.1 pacid=42810894 polypeptide=Potri.013G000600.1.p locus=Potri.013G000600 ID=Potri.013G000600.1.v4.1 annot-version=v4.1
MAISSTMKKKKEKEEYWKRKELVFLVLYAIAFYAFIIHRSLQLSLDHESELYALRPGWLLPPRLNDVSDAQWRNFRANLPILSLVFALFALLANSLRALF
SLKAKGMSFVWLLISLAYLSYLHGACVLFILSIASLNFLLVKMFAQTKYFSPVLWLFNVFFLLCNRVYEGYSFSIFGQQWAYLDNYRGTFRWHICFNFVI
LRMISFGYDYHWAHQDPLFDQQKHIQRCHTCKSGKTCYRLLQEGSVQKEKFSLSIYLAYLVYAPVYIAGPIISFNAFVSQLDTPQNNYTVRDMSWYGLRW
LFSFSLMELVTHLFRYNAFAISRLWKLLSPMDIFIIGYGVLNFMWLKFSLIWRYFRFWSLICGIEAPENMPRCINNCCNLESFWKNWHASYNKWLVRYMY
IPLGGSQRKLLNIWVIFTFVAIWHDLEWKLLSWAWLTCLFFIPEMVVKSAANTLQVEGAFGEFLFREISAAGGAITITCLMVANLVGYVIGPSGFNWLFA
QFLSRQGLPVMGGMFITFYVGTKLMFHIDDAKQRKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G57600 MBOAT (membrane bound O-acyl t... Potri.013G000600
[exp]
0 1
AT3G13690 Protein kinase protein with ad... Potri.014G038300
[exp]
3.31 0.7250
AT5G54390 ATAHL, AHL HAL2-like (.1) Potri.011G124700
[exp]
6.32 0.6601
AT3G61960 Protein kinase superfamily pro... Potri.014G107000
[exp]
14.42 0.6504
AT3G03570 Protein of unknown function (D... Potri.013G073200
[exp]
22.80 0.6052
AT5G49580 Chaperone DnaJ-domain superfam... Potri.008G101800
[exp]
28.30 0.6896
AT1G79030 Chaperone DnaJ-domain superfam... Potri.011G142000
[exp]
31.67 0.6501
AT5G12000 Protein kinase protein with ad... Potri.018G146966
[exp]
33.76 0.6213
AT4G02070 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS... Potri.008G191051
[exp]
35.14 0.6569
AT3G13170 ATSPO11-1 Spo11/DNA topoisomerase VI, su... Potri.001G366700
[exp]
40.29 0.6345
AT5G51180 alpha/beta-Hydrolases superfam... Potri.003G151300
[exp]
43.81 0.6279

Potri.013G000600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.