Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26680 649 / 0 5'-3' exonuclease family protein (.1.2) AT1G01880 95 / 5e-21 5'-3' exonuclease family protein (.1.2) AT1G29630 92 / 5e-20 5'-3' exonuclease family protein (.1.2.3) AT3G28030 75 / 2e-14 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT1G18090 74 / 3e-14 5'-3' exonuclease family protein (.1.2) AT3G48900 63 / 1e-10 single-stranded DNA endonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G077300 [exp] 82 / 8e-17 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.015G041400 [exp] 81 / 2e-16 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 79 / 1e-15 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.017G070500 [exp] 71 / 8e-13 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.015G142800 [exp] 57 / 2e-08 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000270 [exp] 497 / 2e-177 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10011991 [exp] 97 / 1e-21 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10002782 [exp] 92 / 5e-20 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 87 / 2e-18 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10004608 [exp] 86 / 3e-18 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10041375 [exp] 85 / 1e-17 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10036554 [exp] 77 / 5e-15 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 73 / 1e-13 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10005744 [exp] 71 / 4e-13 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10039423 [exp] 64 / 4e-11 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF00752 [poplar] [flax] XPG_N XPG N-terminal domain CL0464 [poplar] [flax] 5_3_exonuc_C PF00867 [poplar] [flax] XPG_I XPG I-region
Representative CDS sequence Show only first row Show all	>Potri.013G000700.3 pacid=42812658 polypeptide=Potri.013G000700.3.p locus=Potri.013G000700 ID=Potri.013G000700.3.v4.1 annot-version=v4.1 ATGGGTATCAAGGGTTTGACAAAGCTGTTGGCGGATAATGCTCCAAAAGCTATGAAAGAGCAGAAATTCGAGAGCTACTTCGGTCGTAAGATTGCTATCG ATGCCAGCATGAGCATCTACCAGTTCCTTATTGTAGTTGGAAGAAGTGGAACTGAAATGCTGACTAATGAGGCTGGTGAAGTCACCAGTCACTTGCAAGG CATGTTTAATCGCACTATTAGGCTTCTCGAGGCTGGAATCAAGCCCCTCTATGTCTTTGACGGGAAGCCTCCAGATTTAAAAAAACAGGAGCTTGCTAAG CGATACTCAAAGCGTGCTGATGCTACTGAGGATTTGGCTGCAGCTGTCGAGTCTGGTGTTAAGGAAGATATTGAGAAATTCAGTAAACGGACAGTCAAGG TGACAAAGCAGCACAATGATGACTGCAAAAGACTTTTAAAACTCATGGGAGTGCCTGTAATTGAGGCTCCTTCTGAAGCAGAAGCACAGTGTGCTACGCT TTGCAAATCAGGAAAGGTCTACGCTGTGGCTTCTGAAGACATGGATTCCCTTACTTTTGGAGCCCCTATATTTCTTCGCCATTTGATGGATCCCAGCTCA AGGAAAATCCCGGTTATGGAATTTGAAATTCCAAAGATCTTGGAGGGGCTAAACCTTAGCATGGATCAATTCATTGACCTGTGCATCCTTTCTGGTTGTG ATTATTGTGACAGCATTCGAGGAATTGGAGGACAGACTGCCTTGAAACTCATCCGACAACACGGTTCTATAGAGAGCATACTAGAGAACATAAACAAAGA AAGGTACCAAATACCAGAGGATTGGCCATATCAGGAGGCTCGACAGCTTTTTAAAGAACCAGCTGTCCTTACTGATGAAGAGCAACTTGATGTCAAGTGG ACTTCCCCAGATGAAGAAGGTTTGATTACTTTTCTGGTGAATGAAAATGGGTTCAACAGTGACAGGGTGACGAAGGCAATAGAGAAAATCAAAGCTGCCA AGAACAAGTCCTCACAGGGCCGATTGGAATCATTTTTTAAGCCAGTTGCCAACACATCTCAACCTGTTAAGCGGAAGGAAGCCGAGAAGACCAGTAAAGA AACTAGCGCTAAAAAATCGAAGGGTGGTAGTGGTAAAAAGAAGTAA
AA sequence Show only first row Show all	>Potri.013G000700.3 pacid=42812658 polypeptide=Potri.013G000700.3.p locus=Potri.013G000700 ID=Potri.013G000700.3.v4.1 annot-version=v4.1 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPLYVFDGKPPDLKKQELAK RYSKRADATEDLAAAVESGVKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVIEAPSEAEAQCATLCKSGKVYAVASEDMDSLTFGAPIFLRHLMDPSS RKIPVMEFEIPKILEGLNLSMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIESILENINKERYQIPEDWPYQEARQLFKEPAVLTDEEQLDVKW TSPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPVANTSQPVKRKEAEKTSKETSAKKSKGGSGKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26680			5'-3' exonuclease family prote...		Potri.013G000700 [exp]	0	1
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.006G192400 [exp]	5.83	0.7520
AT5G05240			Uncharacterised conserved prot...		Potri.013G157700 [exp]	15.87	0.7546
AT2G35035		URED	urease accessory protein D (.1...		Potri.001G159600 [exp]	29.18	0.7345
AT3G20260			Protein of unknown function (D...		Potri.008G004400 [exp]	38.88	0.7225
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	59.68	0.6931
AT5G25800			Polynucleotidyl transferase, r...		Potri.005G186600 [exp]	60.00	0.7002
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Potri.004G046801 [exp]	61.13	0.6600
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	65.00	0.6959
AT3G60310			unknown protein		Potri.006G144600 [exp]	81.21	0.6874
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	104.88	0.6089

Compare expression of checked genes

Potri.013G000700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.