Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 203 / 3e-64 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT3G05860 150 / 2e-45 MADS MADS-box transcription factor family protein (.1.2.3) AT1G65330 150 / 2e-44 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT1G65300 147 / 5e-43 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26630 143 / 3e-42 MADS MADS-box transcription factor family protein (.1) AT5G27810 139 / 6e-42 MADS MADS-box transcription factor family protein (.1) AT2G28700 136 / 2e-38 MADS AGL46 AGAMOUS-like 46 (.1) AT1G31630 134 / 1e-37 MADS AGL86 AGAMOUS-like 86 (.1) AT5G26650 134 / 3e-37 MADS AGL36 AGAMOUS-like 36 (.1) AT1G31640 135 / 4e-37 MADS AGL92 AGAMOUS-like 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002400 [exp] 328 / 6e-114 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 287 / 1e-98 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 145 / 8e-43 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 134 / 2e-36 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 124 / 2e-35 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.001G214900 [exp] 69 / 1e-13 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 67 / 1e-12 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 65 / 5e-12 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.010G167300 [exp] 65 / 7e-12 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032108 [exp] 181 / 5e-56 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10014578 [exp] 178 / 3e-55 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10022316 [exp] 165 / 3e-50 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 148 / 1e-43 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022325 [exp] 145 / 1e-42 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10007711 [exp] 115 / 1e-32 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10007713 [exp] 101 / 4e-27 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10029367 [exp] 93 / 2e-22 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10000974 [exp] 91 / 2e-22 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1) Lus10021399 [exp] 89 / 8e-22 AT5G48670 84 / 1e-19 AGAMOUS-like 80 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.013G001700.1 pacid=42812152 polypeptide=Potri.013G001700.1.p locus=Potri.013G001700 ID=Potri.013G001700.1.v4.1 annot-version=v4.1 ATGACTAGAAAGAAGGTGAAGCTTGCATATATCTGTAATGATTCTGCAAGGAAAGCCACCTTCAAGAAAAGGAAGAAGGGCCTAATGAAGAAGGTGAGCG AGTTAAGCACCCTTTGTGGTATTGATGCTTGTGCTATCGTTTATAGCCCTTATGACTCTCAACCTGAGGTTTGGCCCTCTCCTCTAGGGGTCCAAAGAGT GGTTACTAAGTTCAAAACCATGCCAGAAATCGAGCAAGGTAAGAAAATGGTGAATCAAGAGAGTTTCTTGAGACAAAGGATCACCAAATCCTGTGATCAC ATCAAGAAACAGCGGAAGGACAACCGTGAGAAGGAGGTCACCCATGCTATGTTCCACTGCCTGGGTGGAAATGTTAGCTTGGGTAACCTGCATATGATGG ACTTGAATGACCTTGGATGGATGATTGACCATAGCTTGAGGGACATCGACATGACCCTAAACAATGGGAGTGGCAGTGGCACTAGCCATACCTCTCAATT GGAAGCAGCTGCAACCACTGGGGCTGGACCTAGCAGTGCTAGAGAGCAAGCGCCGGAGTCATCTCAGATGGTTACTAATGATTTTGAGGTTAATGTGGGT GCCATGCAGAGGCAGGAATGGTTCATGGACTTGATGACCCCTCAAGAGCATATGGGGTTTGGCGGGGAAGACATGGTGCTGCCTTCTGGGGATAACAGCC AGAATGGACTTTGGACCAATTCATTTTTCCCTTGA
AA sequence Show only first row Show all	>Potri.013G001700.1 pacid=42812152 polypeptide=Potri.013G001700.1.p locus=Potri.013G001700 ID=Potri.013G001700.1.v4.1 annot-version=v4.1 MTRKKVKLAYICNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDSQPEVWPSPLGVQRVVTKFKTMPEIEQGKKMVNQESFLRQRITKSCDH IKKQRKDNREKEVTHAMFHCLGGNVSLGNLHMMDLNDLGWMIDHSLRDIDMTLNNGSGSGTSHTSQLEAAATTGAGPSSAREQAPESSQMVTNDFEVNVG AMQRQEWFMDLMTPQEHMGFGGEDMVLPSGDNSQNGLWTNSFFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.013G001700 [exp]	0	1
					Potri.010G084600 [exp]	2.82	0.7132
AT5G47530			Auxin-responsive family protei...		Potri.019G096600 [exp]	5.29	0.7219
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.006G023801 [exp]	8.71	0.6679
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	18.24	0.6442
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.001G282800 [exp]	23.36	0.6955
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.018G151800 [exp]	23.91	0.6363
					Potri.005G022200 [exp]	30.08	0.5780
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	35.24	0.6336
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	40.41	0.6189
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023002 [exp]	61.87	0.5954

Compare expression of checked genes

Potri.013G001700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.