Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05858 55 / 3e-11 unknown protein AT5G26620 52 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G001900 [exp] 160 / 3e-53 AT3G05858 55 / 3e-11 unknown protein Potri.013G002000 [exp] 155 / 4e-51 AT3G05858 54 / 5e-11 unknown protein Potri.005G002600 [exp] 124 / 7e-39 AT5G26620 49 / 4e-09 unknown protein Potri.005G002500 [exp] 124 / 7e-39 AT5G26620 49 / 4e-09 unknown protein Potri.010G003900 [exp] 44 / 4e-07 AT3G05858 72 / 5e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001512 [exp] 53 / 2e-10 AT5G26620 53 / 1e-10 unknown protein Lus10031447 [exp] 53 / 2e-10 AT5G26620 53 / 1e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G001800.1 pacid=42810998 polypeptide=Potri.013G001800.1.p locus=Potri.013G001800 ID=Potri.013G001800.1.v4.1 annot-version=v4.1 ATGGTTGGCAACAAGCAAAAGAAGTCCTCTTTCTTCAGCTTTCTCAAGGGTAGAAGGGCTCGACGAACAGGTGACGATGCATCCTATGCTAACGATGATG GAATGAGTGCAAGAAAAATCCTGCCGTTCGACGACGACAAAGGTCCACTTGTCTCTGTGAAGCCCGACCCCCGTATCGACTCCAAAGCTTCTGTTTTCAT TGCCAACTTCCATGCAGCTCGAATCTCAGAATCTGAACGCCAAATCTTTCAGCAAGCAGCTGGGAATGCAGCTTAA
AA sequence Show only first row Show all	>Potri.013G001800.1 pacid=42810998 polypeptide=Potri.013G001800.1.p locus=Potri.013G001800 ID=Potri.013G001800.1.v4.1 annot-version=v4.1 MVGNKQKKSSFFSFLKGRRARRTGDDASYANDDGMSARKILPFDDDKGPLVSVKPDPRIDSKASVFIANFHAARISESERQIFQQAAGNAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05858			unknown protein		Potri.013G001800 [exp]	0	1
AT1G23460			Pectin lyase-like superfamily ...		Potri.008G211900 [exp]	8.12	0.8173
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111700 [exp]	11.31	0.8340
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Potri.006G065700 [exp]	11.83	0.8137
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.010G099600 [exp]	15.39	0.8270
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G142800 [exp]	18.16	0.7648	HGN1.1
AT3G05858			unknown protein		Potri.013G002000 [exp]	25.09	0.8195
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007100 [exp]	28.84	0.7906
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Potri.008G088900 [exp]	29.29	0.7703	CYP704B3
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	29.44	0.7458
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.018G066400 [exp]	29.69	0.7889	CDA1.2

Compare expression of checked genes

Potri.013G001800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.