Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26610 290 / 8e-98 D111/G-patch domain-containing protein (.1.2.3) AT3G52350 56 / 2e-09 D111/G-patch domain-containing protein (.1) AT2G42330 55 / 2e-08 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT1G17070 54 / 8e-08 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT5G08535 49 / 3e-07 D111/G-patch domain-containing protein (.1.2) AT3G52120 50 / 8e-07 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT3G57910 49 / 2e-06 D111/G-patch domain-containing protein (.1) AT3G54230 47 / 2e-05 SUA suppressor of abi3-5 (.1.2) AT1G30480 41 / 0.0009 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002700 [exp] 416 / 1e-147 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G076000 [exp] 56 / 1e-08 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.008G003100 [exp] 52 / 2e-08 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2) Potri.004G081800 [exp] 55 / 3e-08 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.019G043200 [exp] 54 / 6e-08 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.001G269900 [exp] 53 / 1e-07 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.016G048600 [exp] 51 / 3e-07 AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1) Potri.009G064600 [exp] 48 / 5e-06 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031446 [exp] 343 / 5e-119 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 339 / 2e-117 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10037485 [exp] 53 / 1e-07 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10002252 [exp] 53 / 2e-07 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 53 / 2e-07 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10015703 [exp] 52 / 3e-07 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10010955 [exp] 51 / 6e-07 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 50 / 1e-06 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10021033 [exp] 47 / 5e-06 AT3G57910 269 / 4e-90 D111/G-patch domain-containing protein (.1) Lus10023819 [exp] 47 / 7e-06 AT3G57910 273 / 1e-91 D111/G-patch domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G002100.1 pacid=42812647 polypeptide=Potri.013G002100.1.p locus=Potri.013G002100 ID=Potri.013G002100.1.v4.1 annot-version=v4.1 ATGGATTGCAGATGGTTCATTGATAAACAGGAAACAAGCACCCGCAATGAACAGCAACTTGACAGAGAGCAGGACTCGCTTATTGAGGATTTCACAGAGG ATTTTCGATTGCCGAAAAATCACAGACCCACTGAAAATGTTGATCTCGACAATGTTGAACAAGCATCACTGGACACAAAGTTGACAGCATCAAACGTTGG TTTTAGGCTTCTCCAGAAAATGGGATGGAAAGGAAAGGGTCTCGGAAAGGACGAGCAAGGAATCATTGAGCCTATAAAGTCTGGAATTAGAGATCCAAAG TTAGGAATTGGAAAACAAGAAGAAGATGATTTTTTTACTGCAGAAGAAAATATTCAGCGAAGGAAACTTGACATCGAGGTTGAAGAAACTGAGGAAGACA CAAAAAAGCGGGAGGTATTAGCTGAACGGGAGCAGAAAATTCAAACTGAGGTGAAAGAGATAAGGAAGGTGTTCTTTTGTGATCTTTGCAACAAGCAATA CAAATTGGCGATGGAATTTGAAGCTCATCTGAGTTCATACGATCATAATCATAGAAAGCGATTTAAGGAAATGAGAGAGATGCATGGTACAAGCAGTCGT GATGATCGGCAAAAGCGGGAACTACAACGACAGGAGAGGGAGATGGCTAAGTTTGCACAGATGGCAGATGCTCGTAAACAGGAGCAGCAGCTGCAGCAAC AGGAAGAATCTGGATCTGCTCAGCAGAAAAGTGCAACTGCACTTGTGGATCAGGATCAGCGGAAGGCATTAAAATTTGGGTTTTCTTCTAAAGGGGGCTT TTCAAAGAACTCCTCTGCCAAAGCTGCAAAGAAGCCGAAATCAGCTGTAGCCTCTGTTTTCAGCAATGATAGCGATGAAGAACAGTGA
AA sequence Show only first row Show all	>Potri.013G002100.1 pacid=42812647 polypeptide=Potri.013G002100.1.p locus=Potri.013G002100 ID=Potri.013G002100.1.v4.1 annot-version=v4.1 MDCRWFIDKQETSTRNEQQLDREQDSLIEDFTEDFRLPKNHRPTENVDLDNVEQASLDTKLTASNVGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPK LGIGKQEEDDFFTAEENIQRRKLDIEVEETEEDTKKREVLAEREQKIQTEVKEIRKVFFCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGTSSR DDRQKRELQRQEREMAKFAQMADARKQEQQLQQQEESGSAQQKSATALVDQDQRKALKFGFSSKGGFSKNSSAKAAKKPKSAVASVFSNDSDEEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26610			D111/G-patch domain-containing...		Potri.013G002100 [exp]	0	1
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	1.73	0.7514
AT5G66010			RNA-binding (RRM/RBD/RNP motif...		Potri.005G101200 [exp]	1.73	0.7237
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.003G212300 [exp]	3.46	0.7331
AT5G26610			D111/G-patch domain-containing...		Potri.005G002700 [exp]	4.00	0.7191
AT4G26190			Haloacid dehalogenase-like hyd...		Potri.015G059000 [exp]	5.19	0.6728
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.001G283100 [exp]	10.19	0.6640	Pt-ALDH6.5
AT3G16730		HEB2	hypersensitive to excess boron...		Potri.008G219100 [exp]	13.03	0.6590
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Potri.004G130000 [exp]	16.88	0.6519
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	16.91	0.6681
AT4G33690			unknown protein		Potri.009G082200 [exp]	18.97	0.6084

Compare expression of checked genes

Potri.013G002100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.