Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SOYAP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 622 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 597 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 560 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 164 / 9e-46 Eukaryotic aspartyl protease family protein (.1) AT1G69100 157 / 4e-43 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002800 [exp] 727 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.001G356900 [exp] 647 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 623 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 612 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 566 / 0 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.002G228300 [exp] 509 / 3e-177 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G144600 [exp] 47 / 2e-05 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 46 / 5e-05 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 44 / 0.0002 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022957 [exp] 632 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 629 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 604 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 591 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 575 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 534 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 516 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 454 / 3e-156 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10020201 [exp] 45 / 0.0002 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 45 / 0.0002 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease CL0129 [poplar] [flax] PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 CL0129 [poplar] [flax] PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.013G002200.1 pacid=42812176 polypeptide=Potri.013G002200.1.p locus=Potri.013G002200 ID=Potri.013G002200.1.v4.1 annot-version=v4.1 ATGTCTGCACTTGATTTCTACACTCTCTTCAGGCTCAACAGCATATTGCATCCACGTATGGGGAATAAAATTCTTCTCAAGGCTTTCTGTTTATGGGCTT TGACATGCTTCCTTCTTCCTGCTAGCTCTAATGGCCTGGTGAGAATAGGTTTGAAGAAGCGCCATTTGGATCTTCAGACTATTAAGGATGCCAGAATTGC TAGACAGGAGGGAAAAGCAGGAGTAGGTGCAAGCAGCAGGGTCCATGATTTAGGCAGTTCAGATGGGGATATAATACCCCTTAAAAACTATTTGGATGCT CAATACTTGGGAGAAATTGGAATTGGCTCGCCCCCGCAGAACTTCACTGTCGTATTTGACACTGGAAGCTCCAACCTCTGGGTTCCATCATCAAAATGCT ACTTTTCTATTGCCTGCTATTTCCATTCCAAGTACAAGTCAAGCCGGTCGAGTACATATACCAAGAATGGGAACTTTTGTGAAATACATTATGGATCAGG ATCAGTTTCTGGTTTCTTCAGTCAAGACAATGTTCAAGTCGGGGACCTTGTTGTCAAAGATCAAGTTTTCGTTGAGGCTACAAAAGAAGGAAGTCTTTCA TTCATATTGGGGAAGTTTGATGGAATACTTGGGCTTGGTTTTCAGGAAATTTCAGTTGGGAATGTTGTCCCATTGTGGTACAATATGATTCAACAAGATC TTGTAGACGACGAGGTCTTTTCATTCTGGCTCAACAGAAATCCTGAGGCGAAAGAGGGCGGCGAGCTTGTTTTTGGAGGGGTTGATCCAAAACACTTCAA GGGAAAGCATACCTACGTTCCAGTTACCCAAAAAGGTTACTGGCAGATCAATATGGGAGATTTTCTTATAGGAAAACATTCAACAGGTCTTTGCGAGGGG GGTTGCGCTGCAATCGTGGACTCTGGAACCTCATTGCTTGCTGGTCCAACACCAATCATTACGGAAATCAATCATGCCATTGGAGCAGAAGGGCTTGTGA GCGCTGAATGTAAGGAAGTGGTTTCTCACTATGGAGACTTAATATGGGAACTCATAATATCAGGGGTACAACCCAGCAAAGTATGTACGCAACTAGGTTT ATGCATTTTCAATGAGGCTAAGTCTGCAAGAACTGGTATTGAGTCAGTGGTTGAGAAGGAAAACAAGGAGAAATCATCTGCTGGTAATGATCTTCCATGC ACTGCTTGTCAGATGCTTGTTATTTGGGTCCAGAATCAACTAAGAGAAAAGGCAACAAAAGAAACAGCAATCAACTATTTAGATAAGTTATGCGAAAGCC TACCAAGTCCAATGGGACAGTCATCAATTGATTGCAATAGCATTTCAACCATGCCAAACATCACATTTACCATTGGAGATAAACCTTTTAGCCTCACTCC AGAGCAGTATATTCTGAAAACTGGAGAAGGCATTGCTCAAGTTTGCATCAGTGGGTTCATGGCTTTGGATGTGCCGCCTCCACGTGGTCCTCTATGGATT CTTGGTGATGTATTCATGGGAGCGTATCATACCATCTTCGACTATGGTAACCTGGAAGTTGGTTTTGCAGAGGCTGCTTAG
AA sequence Show only first row Show all	>Potri.013G002200.1 pacid=42812176 polypeptide=Potri.013G002200.1.p locus=Potri.013G002200 ID=Potri.013G002200.1.v4.1 annot-version=v4.1 MSALDFYTLFRLNSILHPRMGNKILLKAFCLWALTCFLLPASSNGLVRIGLKKRHLDLQTIKDARIARQEGKAGVGASSRVHDLGSSDGDIIPLKNYLDA QYLGEIGIGSPPQNFTVVFDTGSSNLWVPSSKCYFSIACYFHSKYKSSRSSTYTKNGNFCEIHYGSGSVSGFFSQDNVQVGDLVVKDQVFVEATKEGSLS FILGKFDGILGLGFQEISVGNVVPLWYNMIQQDLVDDEVFSFWLNRNPEAKEGGELVFGGVDPKHFKGKHTYVPVTQKGYWQINMGDFLIGKHSTGLCEG GCAAIVDSGTSLLAGPTPIITEINHAIGAEGLVSAECKEVVSHYGDLIWELIISGVQPSKVCTQLGLCIFNEAKSARTGIESVVEKENKEKSSAGNDLPC TACQMLVIWVQNQLREKATKETAINYLDKLCESLPSPMGQSSIDCNSISTMPNITFTIGDKPFSLTPEQYILKTGEGIAQVCISGFMALDVPPPRGPLWI LGDVFMGAYHTIFDYGNLEVGFAEAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.013G002200 [exp]	0	1	SOYAP2.2
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.005G124200 [exp]	2.44	0.9072
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004700 [exp]	2.64	0.9090
AT2G27830			unknown protein		Potri.003G116300 [exp]	3.46	0.8212
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	4.24	0.8872
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	5.65	0.8849
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	5.91	0.8527
AT2G20740			Tetraspanin family protein (.1...		Potri.004G041500 [exp]	6.48	0.8029
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	6.92	0.8470
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	7.48	0.8194
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022000 [exp]	8.77	0.8417	Pt-LOX1.6

Compare expression of checked genes

Potri.013G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.