Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60190 176 / 5e-55 Cysteine proteinases superfamily protein (.1) AT4G15880 53 / 7e-08 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT1G10570 42 / 0.0004 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105700 [exp] 50 / 8e-07 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 47 / 7e-06 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.008G221500 [exp] 47 / 9e-06 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036134 [exp] 200 / 2e-64 AT5G60190 234 / 6e-78 Cysteine proteinases superfamily protein (.1) Lus10020445 [exp] 46 / 2e-05 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10023104 [exp] 45 / 4e-05 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10000917 [exp] 42 / 0.0004 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.013G002700.1 pacid=42811169 polypeptide=Potri.013G002700.1.p locus=Potri.013G002700 ID=Potri.013G002700.1.v4.1 annot-version=v4.1 ATGGATGACAAAGAGATTGTTTTGTCATACAAGGATGTGGTTTTGAGAGTTTCAGATTTGAATATCCTTAAAGGACCATGCTATCTTAATGACCAAATTA TTGATTTCTATTTTGCTTACTTATCTTCTTCTTATAACGCTGATGCTAATGATATCTTGTTAGTTCCACCTTCCACATCTTATTGGTTCGCAAATTGCCA AGATCAACAGAGTCTTGTCAATGATTTTGTGGAACCTCTTAAGTTTTCAAGTAAGAAACTCATTCTTTTTACTGTGAATGATAACGAAGATTTCAGTGCA GCTGAAAGGGGAACACATTGGAGCTTGCTTGTTTATGATAGGAGCCAGAATTACTTTCTGCATTTTGATAGCTTGCCGGGGATGCACCGATATCATGCCT TGAAGCTCTACAAAGCTGTAAAGGGATTCATGGGCACAGCCAGTGAATCATCATCAAAAGATGGTGCTAAGACTCTGAAAATGAAAGCTGTAGGGTCTGC TGCTGTTCCTTTCTTTAAAGAAGCTAAAACACCACAGCAGACAAATGGATTTGACTGTGGGCTTTATGTTATGGCCATTGCTGAGGTTATTTGCCTATGG CATTCATGTGAAAGGAATGGCAATGATGGTGACTGGTTGTCTGCTGTTGAAAGGGAGGTTAATGCATATCTGGAGACAACAATGCGGGGTGAAGTGTTGA AGCTTATTGAAGATCTGAGGAAACAATGA
AA sequence Show only first row Show all	>Potri.013G002700.1 pacid=42811169 polypeptide=Potri.013G002700.1.p locus=Potri.013G002700 ID=Potri.013G002700.1.v4.1 annot-version=v4.1 MDDKEIVLSYKDVVLRVSDLNILKGPCYLNDQIIDFYFAYLSSSYNADANDILLVPPSTSYWFANCQDQQSLVNDFVEPLKFSSKKLILFTVNDNEDFSA AERGTHWSLLVYDRSQNYFLHFDSLPGMHRYHALKLYKAVKGFMGTASESSSKDGAKTLKMKAVGSAAVPFFKEAKTPQQTNGFDCGLYVMAIAEVICLW HSCERNGNDGDWLSAVEREVNAYLETTMRGEVLKLIEDLRKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60190			Cysteine proteinases superfami...		Potri.013G002700 [exp]	0	1
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.012G059300 [exp]	7.74	0.8238
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032500 [exp]	11.40	0.8048
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Potri.001G423800 [exp]	21.90	0.7653
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	26.83	0.7880
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	28.89	0.7967
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	39.24	0.7899
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	44.09	0.7893
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	56.39	0.7846
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.018G064100 [exp]	56.55	0.7574
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	59.89	0.7269

Compare expression of checked genes

Potri.013G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.