Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 220 / 9e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 195 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 189 / 3e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63330 182 / 1e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 183 / 1e-48 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 177 / 3e-47 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 179 / 4e-47 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17140 179 / 6e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 177 / 7e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 176 / 8e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003200 [exp] 1276 / 0 AT3G53700 202 / 2e-55 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 246 / 5e-71 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 200 / 4e-54 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 193 / 2e-52 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 194 / 3e-52 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 191 / 2e-51 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 190 / 3e-51 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 188 / 2e-50 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 186 / 3e-49 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039056 [exp] 231 / 2e-65 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 206 / 2e-56 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 201 / 9e-55 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 191 / 8e-51 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 185 / 1e-48 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 178 / 1e-46 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 178 / 2e-46 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 175 / 3e-45 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 169 / 4e-44 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 169 / 7e-44 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G002800.1 pacid=42810794 polypeptide=Potri.013G002800.1.p locus=Potri.013G002800 ID=Potri.013G002800.1.v4.1 annot-version=v4.1 ATGCTCTCTCCTTCAACACTTTCGAAGGCAATTCCCAAATGGCTCAATCTAAAATCATTCATTTCTTCAGTATCTTGCACTAATGCCATCCAAATTAACC CAGAAATCAATCAAAACGCACCAAATATTACTGATTTTGATGCAAAGATTCAATCTTTGAGAAATAAACTGTGCCCAGATTACTTAATCAAGGTTTTGAA AAGCACCAGTGATATTAACTCTGCTGTTAAGCTATTCAAATGGGCTTCCCTTCAAAGAAGGTTTAACCACACTGATGATACTTATTATTGGATTATTTTC AAGTTGGGCATGGCTGAAAATGTTGAGGAAATGGAGGGGTTTTGTCAAAATATGGTGAAAGATAGGTGCCCGGGTGTAGAAGATGTTCTTCTTTCATTGG TTGATGCATTTGTTAGAAATTGTAGGCTTAATGAAGCACTGCGTGTTCTTTTTAATATGAATTTGGCTGGTATTAAGCCTTCAATTGATGTGTTTAATTT TGTATTGGGCGCACTTGTGGAAGAGAAGAGAGGGTTTCAAGATGTGGTTTTTGTTTATAAGGAGATGGTGAAAGCAGGAGTGGCACCTAGTATTGATACT TTGAATTATTTGCTGGAGGTTTTGTTTGAGACAGATAGGGTTGATTCTGCTTTGGATCAATATAGGAGAATAAACAAGAAAGGTTGTATTCCTAATAGTA GAACTTTTGAGATAGTAATAAAAGGTCTCATTGCCAAAAATAGAGTTGATGATTCAGTTACCATTTTGCATGAGATGTTGGAACTCGGATGCCTGCCTGA ACTGAGATTTTTTAGATCTACAATACTTTTGTTTTGTGGGGAAGATAGACTGCAACAGGGGATAAGGTTGTTTAGGAAGATGAAAGATTCTAATTTTACC CCGGATCCCTTTATTTATGGAGCTTTGATACAATGTTTGTGCAAGCACCTTAGGTTGGATGAGGCAGCAAACCTTCTTGAAGAGATGATGGAAAGTCGGT TAACACCTGATAATAATGTTTTTGTGGATATTGTAAATGGGTTTTGTAAATTAGGGAAGATAAATGAGGCTATTAAGCTCTTGGAAGATAAACATGTGCA CGTAACTTCTCCACACAATGCATTGCTCCGATGTTGTTGTGATGCTGATAAATTCTTCATGGCCAAAGGTCTCCTTGAGAAGATGTCTGAGAGAAATATC GATGATTGTGATTCTTGGAACATTCTTATCAGATGGCTTTGTGAGAAGGTGGGAGTGATGAATGCATATGAACTTCTAGGTAGAATGATTATATCTTCTT TGATTCCTGACTGTGCCACATATTCCGCTCTTGTTGCTGGCAATTGTAGATTAAGCAAGTATGAAGATGCTCTACAGCTATTTCTTCAGCTTCATGCCAA GTTCTGGATTTTAGATCCTGCTTCTTACTCTGAGCTAATTGAAGGACTGTGCAGGGGAGAAAAGTATCTAGAAGCTGTTAAAGTGTTTTGCTACATGTCT GAGAACAGATGTTCTCTTCAGTCTTTGTCGTTTAATATGCTGATCGAGGGTGTTTGTAACATGGGAATGCTTAATGAAGCTGTCAGGCTACAATTGTTGG GTTATAATTCTGGCACTTCTTGTTCCAATGCTACATGCAATTATATAATGCTTGGATTGTCTAAATCAGACAAGGGAAAACACATGCTTGCTTTTCTCTC ACAAATGTTGGTTCAGGGTACCAATCTTGATATGGAAGCATATTGCATTTTGATACAGAGCATGATTGCACAGAAACAAATAAAGGATTGCACTTTGTTT CTCAATGTGATGGTTAATGAGGGCTTGGTACCTGATTCAGACACATTATATAAGCTACTGTCATGTTTGGCCAATCATTCTCAGTTGTATTTGATATCAC TTTCACTTGATAAACTTGTTTCTGACTGTGAAGTTCTAGATTCAGCTATGTATAACATACTTATTAATGGTCTGTGGAAAGAGGGCAACAAAAATGAGGC TCATCGACTGTTAGACTTGATGCTGGAGAAGGGTTGGGTCCCAGATTCTATGACCCATGGATTGTTGATTGGCTCTGGTAATAGGGAGGGGACAGGTAAG GGGAAATTGACATATATTGATAGCATCAAAGATAGTGTTAGTGACATTCTAGTCGAGGGATTGGGGGAAACATGA
AA sequence Show only first row Show all	>Potri.013G002800.1 pacid=42810794 polypeptide=Potri.013G002800.1.p locus=Potri.013G002800 ID=Potri.013G002800.1.v4.1 annot-version=v4.1 MLSPSTLSKAIPKWLNLKSFISSVSCTNAIQINPEINQNAPNITDFDAKIQSLRNKLCPDYLIKVLKSTSDINSAVKLFKWASLQRRFNHTDDTYYWIIF KLGMAENVEEMEGFCQNMVKDRCPGVEDVLLSLVDAFVRNCRLNEALRVLFNMNLAGIKPSIDVFNFVLGALVEEKRGFQDVVFVYKEMVKAGVAPSIDT LNYLLEVLFETDRVDSALDQYRRINKKGCIPNSRTFEIVIKGLIAKNRVDDSVTILHEMLELGCLPELRFFRSTILLFCGEDRLQQGIRLFRKMKDSNFT PDPFIYGALIQCLCKHLRLDEAANLLEEMMESRLTPDNNVFVDIVNGFCKLGKINEAIKLLEDKHVHVTSPHNALLRCCCDADKFFMAKGLLEKMSERNI DDCDSWNILIRWLCEKVGVMNAYELLGRMIISSLIPDCATYSALVAGNCRLSKYEDALQLFLQLHAKFWILDPASYSELIEGLCRGEKYLEAVKVFCYMS ENRCSLQSLSFNMLIEGVCNMGMLNEAVRLQLLGYNSGTSCSNATCNYIMLGLSKSDKGKHMLAFLSQMLVQGTNLDMEAYCILIQSMIAQKQIKDCTLF LNVMVNEGLVPDSDTLYKLLSCLANHSQLYLISLSLDKLVSDCEVLDSAMYNILINGLWKEGNKNEAHRLLDLMLEKGWVPDSMTHGLLIGSGNREGTGK GKLTYIDSIKDSVSDILVEGLGET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.013G002800 [exp]	0	1
AT3G61690			nucleotidyltransferases (.1)		Potri.002G169732 [exp]	1.00	0.8752
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	2.82	0.8468
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	4.24	0.8453
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	5.29	0.7989
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	8.71	0.8273
AT4G34040			RING/U-box superfamily protein...		Potri.001G304900 [exp]	10.86	0.7489
AT3G14120			unknown protein		Potri.001G165900 [exp]	12.24	0.7746
					Potri.007G113400 [exp]	12.64	0.8070
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	12.84	0.8270
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	14.38	0.7840

Compare expression of checked genes

Potri.013G002800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.