Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62210 251 / 6e-78 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 268 / 1e-77 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT3G62200 256 / 2e-75 Putative endonuclease or glycosyl hydrolase (.1) AT5G61180 211 / 3e-62 Putative endonuclease or glycosyl hydrolase (.1) AT3G60940 150 / 4e-41 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 147 / 1e-39 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G64710 141 / 9e-35 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G09840 133 / 6e-32 Putative endonuclease or glycosyl hydrolase (.1) AT2G15560 108 / 1e-24 Putative endonuclease or glycosyl hydrolase (.1) AT3G62850 94 / 3e-20 C2H2ZnF zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003800 [exp] 953 / 0 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 370 / 2e-121 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 373 / 3e-119 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 360 / 7e-118 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 152 / 5e-38 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 152 / 6e-38 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 112 / 5e-26 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 109 / 5e-25 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009982 [exp] 249 / 6e-73 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 174 / 3e-47 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 152 / 5e-38 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 146 / 5e-36 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 108 / 1e-24 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 82 / 2e-17 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF01936 [poplar] [flax] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Potri.013G003000.3 pacid=42811213 polypeptide=Potri.013G003000.3.p locus=Potri.013G003000 ID=Potri.013G003000.3.v4.1 annot-version=v4.1 ATGGGCGGAGGCAGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGAGGCACAGTATATGACTGCCAAGATTTCAGTTTGGTGGGACATTGAGAATTGTCATG TTCCCATGGGCTGTGACCCCCATGCCATAGCACAAAACATAAGTTCAGCCCTTGTCAAGATGAATTATTGTGGTCCAGTCTCTATTTCTGCTTATGGTGA CACCCATCGAATCGATTCTGCTGTTCAACAGGCTCTTTCTAGTACTGGGATTGCTCTCAATCATGTCCCTGCAGGTGTGAAAGATGCAAGTGATAAGAAG ATACTTGTTGATATGTTGTTCTGGGCAGTGGACAATCCCGCGCCTGGTAATTATTTGTTGATTTCTGGTGATCGAGACTTCTCAAATGCTCTTCATCAGT TGCGAATGAGGAGATATAATATTCTTCTAGCACAACCACAGAAGACATCCGCATCCCTTCTTGCAGCCGCGAAGAGTGTATGGCTTTGGACGAGTCTTTT GGCTGGAGGACCGCCGCTCACTGAAGGTGAGTTACAAAAACTTTGTAGTAATAACTATATGTCCACTTCAGACACGAAACAGATTCCAGTGTCTGATGCC GCCCAAATAAAGGAATCAGTAGATTCCTATTCTGAGAAGCCTTATGTGGCAAATCAGAAGTCTCCTTACACACCAAGGGGTCATGACAATAAACAGAAAG GGAAAAACATTCAAAGAAACCCGAGTCAAATAAATACATCCAAAACAACAAGCTCGCCTCTTTGGACCCAAGAAGATCATCACAACTCAAACTCTCACCA ACCTGGTCCTTCTTTCCCCAGAGTTCCCCCAAGTGGACCTGGCCTGGATTTTGTTCCTGGAAATAATAATTTTACTTGGAGTGACAACACCCACATCAAT GGCAACTACCAAAATCATTATACACAGCAATTAAGGCCAAACAATCCTGGTATGCGACCTGAATTTGCAGCAGGTGGTTTGTATCCTCCCCATCCTAATC TTCATCCTCGCGCCCCTCCTCCAATGCCTGTGAGACCCAATGGAACTAGCTTTACCTCTGCACCATATACAAGTGCACCTGATATTGGTATTTTGAACAT TCCCGGACACCCCGTCAACTTTAACCCTCAACGACGAAATCCAGAGCTAAAACATGATCCCAAGAAGAAACTTCCCAGATCTGTAAGCTTAAGTAACTCG CAAAATGGAAATATGGCACATAACTCGCCATCAGTTTACCGGGACGAGAAGCCAAACCATAGGTACCCTGGTGGTCCAGAATATCCACCATCATCCTCAC ATGCAATGGGAGCCAGTGTTGCTCCAGGGAGTGATAAATGGGGGAGTCAAGGTTGCCCAAAACCTTCCGAATATGTTCAAGGCCTTATAGGAGTGGTCTT GCTTGCCTTGAACACCCTTAAAAGTGAAAGGATAATGCCAACTGAAACAAATATAGCTGACTGCATCCGCTATGGAGATCTGAAGCACCGTAATACTGAC ATTAAGAAGGCCCTTGAGAGTGCCATTAAGCATCAGATGGTAGCAACTCGGAGTTTAGGTGCTATGCAGTTGTATGTTGGTAAAAATGAGAAACTGTGGA AATGTGTCAACCCTGTTGGTGGTAAAGCTAAACAAATCCAAAAAGCAACATGGAATGAAATTCATCAATTTCTGAGATCCTCTGCTGGACGATCTGCAAT CTTGGCTTCTGAGTGCAGGTATGAAGCAGGCACTATTTTAAAGAGTAAGTGCTTGAAAGAACATGTTCTGGGTGATGTACTTCAGATCTTGAACATGGTA ATTGGCTATAAGAAATGGATCATACCTCATCAATCAGGATGGAGACCACTTAGCATAACAATAGCAGAAAAGGCTAACAGCGATTCAGGCTCCACAGAGG GCACATTTGGCTCCACAGAGAGCACATTTGGCTGGGATACAGGCTCCACAGAGGGCACATTTGGCTGGGATACAGGCTCCACAGAGGGCACATTTGGCTG GGATACAGGCTCCACAGAGGGCACATTTGGTGGGGATTCAGGCACCACAGAGGGCACATTTGGCTGTGAGTGGGGTTGA
AA sequence Show only first row Show all	>Potri.013G003000.3 pacid=42811213 polypeptide=Potri.013G003000.3.p locus=Potri.013G003000 ID=Potri.013G003000.3.v4.1 annot-version=v4.1 MGGGRGGGGGGGGAEAQYMTAKISVWWDIENCHVPMGCDPHAIAQNISSALVKMNYCGPVSISAYGDTHRIDSAVQQALSSTGIALNHVPAGVKDASDKK ILVDMLFWAVDNPAPGNYLLISGDRDFSNALHQLRMRRYNILLAQPQKTSASLLAAAKSVWLWTSLLAGGPPLTEGELQKLCSNNYMSTSDTKQIPVSDA AQIKESVDSYSEKPYVANQKSPYTPRGHDNKQKGKNIQRNPSQINTSKTTSSPLWTQEDHHNSNSHQPGPSFPRVPPSGPGLDFVPGNNNFTWSDNTHIN GNYQNHYTQQLRPNNPGMRPEFAAGGLYPPHPNLHPRAPPPMPVRPNGTSFTSAPYTSAPDIGILNIPGHPVNFNPQRRNPELKHDPKKKLPRSVSLSNS QNGNMAHNSPSVYRDEKPNHRYPGGPEYPPSSSHAMGASVAPGSDKWGSQGCPKPSEYVQGLIGVVLLALNTLKSERIMPTETNIADCIRYGDLKHRNTD IKKALESAIKHQMVATRSLGAMQLYVGKNEKLWKCVNPVGGKAKQIQKATWNEIHQFLRSSAGRSAILASECRYEAGTILKSKCLKEHVLGDVLQILNMV IGYKKWIIPHQSGWRPLSITIAEKANSDSGSTEGTFGSTESTFGWDTGSTEGTFGWDTGSTEGTFGWDTGSTEGTFGGDSGTTEGTFGCEWG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62210		EDA32	embryo sac development arrest ...		Potri.013G003000 [exp]	0	1
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	4.47	0.8121
AT2G03810			18S pre-ribosomal assembly pro...		Potri.010G138100 [exp]	5.47	0.7721
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G324800 [exp]	6.32	0.8192
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.005G219500 [exp]	7.00	0.7296	Pt-WRKY21.1
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	8.30	0.7488
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	9.38	0.7493
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Potri.004G047100 [exp]	10.95	0.7590
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	13.41	0.7756	Pt-EIN3.1
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Potri.006G146500 [exp]	13.78	0.7670	Pt-MEK1.1
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	22.78	0.7868

Compare expression of checked genes

Potri.013G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.