Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62200 280 / 2e-87 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 281 / 1e-85 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT3G62210 255 / 9e-83 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT5G61180 223 / 2e-69 Putative endonuclease or glycosyl hydrolase (.1) AT3G60940 162 / 4e-47 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 159 / 6e-46 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G64710 144 / 3e-37 Putative endonuclease or glycosyl hydrolase (.1.2) AT5G09840 137 / 8e-35 Putative endonuclease or glycosyl hydrolase (.1) AT2G15560 112 / 5e-27 Putative endonuclease or glycosyl hydrolase (.1) AT3G62050 86 / 6e-20 Putative endonuclease or glycosyl hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G003301 [exp] 523 / 0 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 515 / 2e-178 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 367 / 8e-121 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 358 / 2e-118 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.001G307700 [exp] 159 / 3e-42 AT5G09840 588 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.019G004000 [exp] 155 / 7e-41 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 117 / 3e-28 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 112 / 8e-27 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009982 [exp] 269 / 3e-83 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10033511 [exp] 157 / 2e-41 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 152 / 8e-40 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 114 / 2e-27 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 79 / 1e-16 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 0 / 1 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF01936 [poplar] [flax] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Potri.013G003100.2 pacid=42810953 polypeptide=Potri.013G003100.2.p locus=Potri.013G003100 ID=Potri.013G003100.2.v4.1 annot-version=v4.1 ATGGGCGAGGGCGGAGGAGGAGGAGCAGGGGCACAGTATGTGAATGCGAAGACATCAGTTTGGTGGGACATAGAGAACTGTGCTGTACCGAGAGGCTGTG ACCCTCATGCCATAGCACAAAACATAAGCTCAGCTCTTGTCGAGATGAATTATCGCGGTCCTGTCTCTATTTCCGCTTATGGTGACACTCATGGTATCAA CTCAACTGCTCAACAGGCTCTTTCTAGCACTGGGATTGCTCTCAATCATGTCCCTGCTTCAGGTGTTAAAGATGCAAGTGACAAGAAGATTCTTGTTGAT ATGTTGTTCTGGGCGGTGGACAATCCTGCGCCAGCAAATTACTTGTTGATTTCTGGTGATCGAGACTTCTCCAACGCTCTTCACCAGTTGAGAATGAGGA GATACAATATTCTTCTAGCACAGCCCAAGAGAGCATCCGTACCCCTTGTTGCGGCCGCAAAGAATGTATGGCTTTGGACGAGTCTCTTGGCTGGAGGAAG GCCACTCCCTGAAGGTGAATCACAACAACTCGGTAGCAAAAACTACACGTCCAGTCCAGGCACGACAGAGATTCCAGTGTCTGGTGCCGCTCAAACGAAG GAACCAGTAGATTCCTATTCTGGGAAACCGTATGTGGCAAATCAGAACTCTCCTTCCACATCAAGGCGTGATAGAGGGAGAGCGAATACAATCCAAAGAA ACCCGAGTCAAACAAATGCATCGAAAACAACAAACACGCCTTTTTACCCCAGTGCTCCTCCTCCAATGCCTGCCAGACCCTACGGAACTAGCTATACCTC TGCACCATCTACAAGAGTGCCTGCTTTTGGTAGTTGGAACAATTTTAGACACCCTGTCAGCTCTTGCCCTCAACGACGAAATGCAGGGCTAGAGCATGAT CCCAAGAAATCAAAAGGGTTTTGTGCTGGAAAAAGACCAGAGCCAAGTAAAAACAAGAAGAAACCAGAGGGTGAAAACTCAAAAGGGTCTTGTGCAAGAA GAGGAGCAGAGGTAAAACATGATCCCCAGAAGAAACCACGCAGTGAAAACAAGAAGAAACCAGAGGGTGGAAACTCAAAAGGGTCTTGTGGAGGAAAAGG ACCAGAGCTAAAACCTGACCCCAGTAAGAAACCAGAGGGTGAAAACAAGAAAGTGGCCAGTGCAAGAAAAGGTGTTTCAATGAAAAAACCAGTTGTTCCT AGATCAAAAAGACATGTTAGCGTAACAAAACAGGACAAAGGTAAGAAAAAACCACCTGCTGCGAAAGCAAGAGTGCGAAAGTAA
AA sequence Show only first row Show all	>Potri.013G003100.2 pacid=42810953 polypeptide=Potri.013G003100.2.p locus=Potri.013G003100 ID=Potri.013G003100.2.v4.1 annot-version=v4.1 MGEGGGGGAGAQYVNAKTSVWWDIENCAVPRGCDPHAIAQNISSALVEMNYRGPVSISAYGDTHGINSTAQQALSSTGIALNHVPASGVKDASDKKILVD MLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPKRASVPLVAAAKNVWLWTSLLAGGRPLPEGESQQLGSKNYTSSPGTTEIPVSGAAQTK EPVDSYSGKPYVANQNSPSTSRRDRGRANTIQRNPSQTNASKTTNTPFYPSAPPPMPARPYGTSYTSAPSTRVPAFGSWNNFRHPVSSCPQRRNAGLEHD PKKSKGFCAGKRPEPSKNKKKPEGENSKGSCARRGAEVKHDPQKKPRSENKKKPEGGNSKGSCGGKGPELKPDPSKKPEGENKKVASARKGVSMKKPVVP RSKRHVSVTKQDKGKKKPPAAKARVRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	1.41	0.8555
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	1.73	0.7845	BES1.2
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	2.00	0.7980
AT1G13920			Remorin family protein (.1)		Potri.008G093300 [exp]	2.44	0.7574
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	4.00	0.7683
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207400 [exp]	6.00	0.7235	ILL1,Pt-ILR1.2
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.012G097000 [exp]	6.32	0.7588
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	7.74	0.7460
AT1G26780	MYB	LOF1, ATMYB117	LATERAL ORGAN FUSION 1, myb do...		Potri.019G040900 [exp]	8.48	0.7512
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	10.90	0.7251

Compare expression of checked genes

Potri.013G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.