Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09450 462 / 6e-158 AtHaspin Haspin-related gene, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003400 [exp] 674 / 0 AT1G09450 610 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001517 [exp] 493 / 1e-169 AT1G09450 607 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1) Lus10031442 [exp] 488 / 9e-167 AT1G09450 629 / 0.0 Haspin-related gene, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF12330 [poplar] [flax] Haspin_kinase Haspin like kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G003600.2 pacid=42811445 polypeptide=Potri.013G003601.1.p locus=Potri.013G003600 ID=Potri.013G003600.2.v4.1 annot-version=v4.1 ATGCCTCCCTTGGAACCTATGTGTGGCGATGATTTGAACATTGTAGATTTGATAACTCCAGAAAAACCTGTTTTGAATACTAATTCGAAACTGCATTCTG TCCAGAGTAGAATTAAATCGTATTTACCAGGTAAAGATGTACTTGAAAGGAATTCACTTGATGAGGGTTGTGAAGAAATTGAAGGAGCAGCTAAGAAACT GTCTTCAGCTTCAACGTCTACTTTATCAGATCATGACATGAACATTGTGGATTTGATAACTCCAGAAAAACCTGTTTTGAAGACTAAATTCGAAACCGCA TTCTGTGCAGTTAAGAAACTGTCTTTAGCTTCAACGTCTACTTTATCAGATCATGACTTGAACATTGTGGATTTGATAACTCCAGAAAATCCTGATTTGG AGACTAATTCGAAAATGCATTCTGTCCAGAGTAGAATTAAATCATATTTACAAAGTATAGATGTACTTGAAAGGAATTCTCTTTCACAAAAGAGCAGTTC TATGTTGGTGTGTGATGAGGGTTGTGAAGGCATTGAAGGTGCAATTAAGAAACTGTCTTTAGCTTCAACGTCTACTTTATCAGATCATGATTACGGGGAT CCATTTGCTGCGCTATTGGCAGTCTGTGGACATGAACCAGATAATATTGTCAAGGTGGGTGAAGGCACTTATGGAGAAGCATTTGAAGCTGGTAATACTG CCTGCAAAATAGTCCCCATTGATGGGGATATATCGGTAAATGGAGAAGTACAGAAGAGATCAGAAGAATTGCTCGAGGAGGTTATCCTTTCTCGAACTCT CAACAATATCAGATCACATGATTCTGACGTGGACAACGCTTGCACAACATTCATCGAAATTCTAGATCTAAGAGTGTGCGAAGGTCCTTATGACCCTGCC TTGGTCAGAGCATGGGAATATTGGGATGAAAGGCATGGTTCTGAAAATGATCATCCTAAGGAGTTTCCACAGAAACAGTGCTATGTTGTGTTTGTATTAC AACATGGTGGGAAAGACCTTGAAAGCTTTGTGCTCTTAAACTTTGATGAAGTGCATAGTTTATTGGTTCAGGTTACAGCTGGCTTAGCTATCGCAGAAGC TGCATATGAATTTGAGCATCGTGACCTGCACTGGGGAAACATTCTTTTGCGTCGAAATGACTCTACTACAGTGCAGTTTATCCTGGAGGGGAAGAAAATG ATTTTCAGAACTTCAGGATTATTGATCTCAATAATTGATTTTACTCTGTCCAGAATTAATACAGGTCAAGATATACTCTTCCTGGACTTAACCTCGGACC CTTATCTCTTTAAGGGCCCGAAAGGAGATAGACAGGCAGAAACGTATAGGAAGATGAAGGAAGTAACTGGAGACTTCTGGGAAGGAAGCTTTCCCAAGAC AAATGTATTGTGGTTGATATACTTGGTGGACATATTGCTCCTGAAGAGATCTTTTGATCGCTCTTCAAAAAATGAGGGAGATTTGCACTCATTGAAAAAG CGTCTCAGCAAGTATAATTCAGCTAAGGAAGCTATTATTTTGGATCCCTTCTTCAGCAACTTGCTTGTTATGTAA
AA sequence Show only first row Show all	>Potri.013G003600.2 pacid=42811445 polypeptide=Potri.013G003601.1.p locus=Potri.013G003600 ID=Potri.013G003600.2.v4.1 annot-version=v4.1 MPPLEPMCGDDLNIVDLITPEKPVLNTNSKLHSVQSRIKSYLPGKDVLERNSLDEGCEEIEGAAKKLSSASTSTLSDHDMNIVDLITPEKPVLKTKFETA FCAVKKLSLASTSTLSDHDLNIVDLITPENPDLETNSKMHSVQSRIKSYLQSIDVLERNSLSQKSSSMLVCDEGCEGIEGAIKKLSLASTSTLSDHDYGD PFAALLAVCGHEPDNIVKVGEGTYGEAFEAGNTACKIVPIDGDISVNGEVQKRSEELLEEVILSRTLNNIRSHDSDVDNACTTFIEILDLRVCEGPYDPA LVRAWEYWDERHGSENDHPKEFPQKQCYVVFVLQHGGKDLESFVLLNFDEVHSLLVQVTAGLAIAEAAYEFEHRDLHWGNILLRRNDSTTVQFILEGKKM IFRTSGLLISIIDFTLSRINTGQDILFLDLTSDPYLFKGPKGDRQAETYRKMKEVTGDFWEGSFPKTNVLWLIYLVDILLLKRSFDRSSKNEGDLHSLKK RLSKYNSAKEAIILDPFFSNLLVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.013G003600 [exp]	0	1
AT5G11160		APT5	adenine phosphoribosyltransfer...		Potri.018G026200 [exp]	8.48	0.8245	Pt-APT2.1
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	9.21	0.8585	Pt-GDI1.1
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	15.00	0.8680
AT3G06840			unknown protein		Potri.003G073200 [exp]	27.38	0.8288
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	28.28	0.8633
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.007G091200 [exp]	32.15	0.8386
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	35.00	0.8487
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.001G405500 [exp]	35.56	0.7903
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	36.16	0.8514
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	42.48	0.8237

Compare expression of checked genes

Potri.013G003600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.