Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56720 677 / 0 Protein kinase superfamily protein (.1.2.3) AT1G09440 579 / 0 Protein kinase superfamily protein (.1) AT3G59110 578 / 0 Protein kinase superfamily protein (.1) AT5G18500 573 / 0 Protein kinase superfamily protein (.1.2) AT2G42960 567 / 0 Protein kinase superfamily protein (.1) AT3G17420 526 / 0 GPK1 glyoxysomal protein kinase 1 (.1) AT1G01540 440 / 3e-151 Protein kinase superfamily protein (.1.2) AT4G01330 435 / 6e-149 Protein kinase superfamily protein (.1.2) AT4G02630 421 / 2e-143 Protein kinase superfamily protein (.1) AT4G34500 413 / 5e-141 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003300 [exp] 847 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G214200 [exp] 652 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G059000 [exp] 632 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 632 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001600 [exp] 623 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G026100 [exp] 460 / 2e-158 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 427 / 7e-146 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G115600 [exp] 417 / 6e-142 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 416 / 2e-141 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006215 [exp] 614 / 0 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036863 [exp] 607 / 0 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001423 [exp] 607 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 605 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 569 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 564 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 449 / 4e-154 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 441 / 1e-150 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 434 / 1e-148 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 432 / 8e-148 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G003700.2 pacid=42812406 polypeptide=Potri.013G003700.2.p locus=Potri.013G003700 ID=Potri.013G003700.2.v4.1 annot-version=v4.1 ATGGCCAATGATCTAAACGCTGAACTATCCAAGAAAACTGCCATTTTGGGTCTCAAGGTCTGGGAAGTGATTGGAATTTGTGTTGCATTATTTATCATAA TCATCCTCTCTGTACTGTCCTTCTGTTTAACTTTACGGAAGAAATCTAAAAGAGATAGAAACCGTCTTCCCCTTAGCCAAATCCCAACTATTTCCAAGGA AATTAAGGAAGTTCGAGTGGAACAGGTATCAACAAATGAATTTGTACCTCGTGATGGGATTCTTCTCACAATTCATGACAAGTCCAGTGACAAAGAATCG GATAAGGTCTTGGTTCATCTAGGCATGGGGAAGGGGAAGAATGGAGGCAATATGAGTAAGTCAGATTCTTTTCATCATTTAGAGAAAGATTGTGGATCAC AGTCAGGTGAAGAAGGGAGTTCCGGAACAGTAACTGTATATAAACCTTCTTCTTCATACCCTATTACTGCTCCTTCTCCGTTGATTGGTCTGCCTGAGTT CTCTCATTTGGGTTGGGGTCACTGGTTCACCTTGAGGGATCTTGAGCTTGCAACAAATCGGTTTTCGAAGGAGAATATCCTTGGTGAGGGTGGATATGGA GTGGTTTATCAGGGACATTTGATCAATGGCACTCCAGTGGCAGTAAAAAAGATCCTGAACAACTTGGGCCAAGCGGAAAAGGAGTTTAGGGTGGAAGTTG AAGCCATTGGTCATGTTCGACACAAGAATTTGGTTCGTCTTCTGGGATATTGCATAGAAGGGACACACAGGATGTTGGTTTATGAGTATGTCAACAACGG AAACTTGGAACAGTGGCTTCATGGAGCTATGCGTCAGCATGGATATCTTACTTGGGAGGCCCGCATGAAGGTTCTACTTGGCACGGCTAAGGCTCTTGCC TATTTGCATGAGGCCATTGAGCCAAAAGTGGTGCATCGAGACATCAAGTCGAGTAATATATTAATTGATGATGACTTCAACGCTAAGGTTTCTGATTTTG GCTTGGCCAAGTTGCTTGGTGCTGGCAAAAGCCATGTAACGACTCGAGTTATGGGAACCTTCGGATATGTGGCTCCTGAATATGCAAATAGTGGACTCTT GAATGAAAAGAGTGATGTTTATAGCTTTGGGGTTGTGCTGTTAGAATCAATCACCGGAAGAGATCCTGTAGACTATGGCCGCCCTACTCATGAGGTAAAT CTTGTGGATTGGTTGAAAATGATGGTCGGAAACAGACGGTCTGAAGAAGTAGCAGACCCAAATATTGAAGCGAGGCCATCAACAAGAGCTCTAAAACGTG CCCTGTTGACCGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCTAAGATGGGTCAAGTTGTTCGTATGCTCGAGTCTGAGGAATATCCCTTTCC AAGAGAGGATCGTAGGCATCGAAGAACTCGAGGAGGTAGCATGGAAATTGAATCTCAAAGGGAAAATTCTGACACTGATCGCAGCGACTATCCAGGTTCA AGATCTGAAAGCCTGCGAATTTGA
AA sequence Show only first row Show all	>Potri.013G003700.2 pacid=42812406 polypeptide=Potri.013G003700.2.p locus=Potri.013G003700 ID=Potri.013G003700.2.v4.1 annot-version=v4.1 MANDLNAELSKKTAILGLKVWEVIGICVALFIIIILSVLSFCLTLRKKSKRDRNRLPLSQIPTISKEIKEVRVEQVSTNEFVPRDGILLTIHDKSSDKES DKVLVHLGMGKGKNGGNMSKSDSFHHLEKDCGSQSGEEGSSGTVTVYKPSSSYPITAPSPLIGLPEFSHLGWGHWFTLRDLELATNRFSKENILGEGGYG VVYQGHLINGTPVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRQHGYLTWEARMKVLLGTAKALA YLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLESITGRDPVDYGRPTHEVN LVDWLKMMVGNRRSEEVADPNIEARPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPFPREDRRHRRTRGGSMEIESQRENSDTDRSDYPGS RSESLRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	0	1
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.003G143200 [exp]	1.00	0.9627
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	1.41	0.9568
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.003G132000 [exp]	2.44	0.9529
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	2.82	0.9502
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	3.00	0.9422	ATEB1.4
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	3.31	0.9406
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Potri.005G164200 [exp]	3.87	0.9308
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	4.58	0.9470
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	4.89	0.9453
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	4.89	0.9371	ARAC2.1

Compare expression of checked genes

Potri.013G003700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.