Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62240 501 / 3e-166 C2H2ZnF RING/U-box superfamily protein (.1) AT2G47090 446 / 2e-145 C2H2ZnF zinc ion binding;nucleic acid binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G004600 [exp] 965 / 0 AT3G62240 497 / 2e-165 RING/U-box superfamily protein (.1) Potri.002G189700 [exp] 685 / 0 AT3G62240 818 / 0.0 RING/U-box superfamily protein (.1) Potri.014G114900 [exp] 679 / 0 AT3G62240 830 / 0.0 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010069 [exp] 510 / 2e-169 AT3G62240 810 / 0.0 RING/U-box superfamily protein (.1) Lus10038048 [exp] 496 / 8e-165 AT3G62240 714 / 0.0 RING/U-box superfamily protein (.1) Lus10004521 [exp] 476 / 3e-156 AT3G62240 763 / 0.0 RING/U-box superfamily protein (.1) Lus10009987 [exp] 392 / 3e-34 AT3G62240 625 / 0.0 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G004200.1 pacid=42812039 polypeptide=Potri.013G004200.1.p locus=Potri.013G004200 ID=Potri.013G004200.1.v4.1 annot-version=v4.1 ATGGATGATACTTGTGCTGTTTGTGCTGATACCCTTGAATGGGTTGCTTACGGACCATGTCTCCATAAAGAAGTCTGTTCTACTTGCATCATTCGTCTTC GTTTCATTTGCAATGATTTCTATTGCTGCATTTGCAAATCAGAATCCAACACCATCTTTGTCACTAAGGCATTAGGGGATTATACAAGGATGATAAGTGA CTTCAAGGGTTTAGGAGAAATTAATGGAAGTGAGGGTAAAGCAGGGGAGTATTGGTATCATGAAGGGACAAAAGCTTATTTTGATGATTTTGATCATTAT AAGATGATCAAAGCTATGTGTAAGTTATCATGCAATGTTTGCAACAAGAAGAATGGAGGGTCAAGGGAGTTTAATAGCGTTGAGCAATTGAAGGCTCATT TGTTTCACAGGCATAGTCTGTTTATGTGCAGTCTGTGTTTGGAAGGTAGGAAGATATTTATAAGTGAGCAGAAGTTATATAATAGAGAACAATTGACTCA ACATGTGAGGACGGGTGACTCAGTGGTTGATGGCAATGAAAGCGAAAGAGGTGGATTTACAGGACATCCTATGTGTGAGTTCTGTGAGAATCCTTTTTAT GGAGATAATGAGCTTTACCTGCACATGTCCACTGATCATTTTACTTGCCACATATGCCAAAGGCAGCATCCTGGACAATATGAATACTTTAACAATTATG ATTACTTGGAGATCCATTTTCGTCAAGAGCATTACTTATGCGAGGATGAGGCTTGCCTTGCAAGAAAGTTTATTGTTTTTGCAACTGAATTCGAATTGAA GAGGCATAATGCCATGGAACATGGAGGGCGCATGTCTCGTTCTAAGCGCAGTGCTCTACTTCAGATACCTGTGAGTTTCCAGTTTCGGCAAATTAATGAA CATGATCGGCGTGGTGGTGGTCGTGGTAGTCATTCAAATTCGTCAGGCTATCAAATGAACATGGCCATTGAAGATAGTCTTGAGCCTGCCAATGCTGAAA GGTCTTGTGATATTTCTTCAAATGCGCAAACAGTTTCTACTCATAGAGAGGAACATGAAATTGATATGATTGTTAACCCTTTTGAGTCATTAGCCACCAC AGATTCTGAGCCGCCTTCAAGATATCATCATGTTTTAGGATGGAACACTAGCAGAGCACCAATGGAAGAAACATCCTTTCCCCCACTTCCTTTGGCTCCA AGAAGCAGCCAACGGAGATCCAGAAATGGTTTGGGAGGGTTGAGTGGGAATACAATGGCTGCTCACCTCAGCCGCCAAAACATGGTAAAAGTTCTTAATT CTTCTCGGGCTTTGCCAGCAAACAATCATCCTAACTCAGTAGCTAGTATTTCGTACCAGTCAAGACCTGTGTCGGATTCTAGGGTTTTATCTTCATCCAG ATCTCCGAGTTCATCTGTTCTATCTACTTACACGAGCTCTCCTCAGGCTGGGTCATCAAGGGCTAATGGACTTCTTGTATCTTCTAATTTTGCAAGTTCA TCAAGGACTTCAAATAGTAACAGCAAGGTCAGCCAAGCTAGCGCTGCTCCAAATCCTGCAGACAGGACTTCTCACAAATCTCTTTCAAGTTTTCCCTCTC TGTCTGCCACTCAAGTGGACAATATGTCTACAAGTGCCTCACCTATGCTGAAGGTTGAGGATGTTCAATCTGCTAATAAGGCTCTAGTGGAGAAAATTCG TGCTGCATTAGAATTTGACAAGGACAAATTCGCTGCATTCAAGATAATATCCAGAGAGTATCACCGTGACATAATTGATGTTGCAGAGTATCTTGCCTAT GTGCATCAATTTGGCCTGTCACATCTTGTCCTAGAGCTGGCTAGACTTTGTCCCAAAGCTGAGAAGCAAAGAGAGCTTGTTGAGATTTATAATTTCAATG TGGGGGGGAATGGTTTGAGCATTGACAATGGTCCATCCAAAAGCAAGAAATGTTCGAAGAAAGGCAAAGAGAAGTGTGATGATAATGTTATCAGTGTCTC TGAGAACATTTTTTCAGATAGTCTTAGGGTGGAGATCTTACCAAAGGATGGGAATTGTGGTGGAAAAGGCAAATCAAAGATTTTGGTTGACAAACAAGCT AACTTGGATTTGTCAAGGGAGCCAAAGAGTGAACATGCTGCTCAGGCAGCTGGTGTCAGCTTGAAGAAGAATGTGGGGGCCGGGGGAGGAGGGAATAAAC CTCGGAAAAAAACCACGAAGTTCATGAAGAACCGTCTCGGGGGTACTTCCACTGCCTCACTGCCAGATGCTAGTAATTCTGATGCTGGTATTGATGAAAA AGAAGAGAAAGCAGATGTGAACAAAGATATAGCTGTGGTGTTGCCAGTTCATGGAGTTTGGAAAAATGGGGGAGGTCGAAAGCTTGTGGTGATGACCCAA AACAACCGCAACCGATGA
AA sequence Show only first row Show all	>Potri.013G004200.1 pacid=42812039 polypeptide=Potri.013G004200.1.p locus=Potri.013G004200 ID=Potri.013G004200.1.v4.1 annot-version=v4.1 MDDTCAVCADTLEWVAYGPCLHKEVCSTCIIRLRFICNDFYCCICKSESNTIFVTKALGDYTRMISDFKGLGEINGSEGKAGEYWYHEGTKAYFDDFDHY KMIKAMCKLSCNVCNKKNGGSREFNSVEQLKAHLFHRHSLFMCSLCLEGRKIFISEQKLYNREQLTQHVRTGDSVVDGNESERGGFTGHPMCEFCENPFY GDNELYLHMSTDHFTCHICQRQHPGQYEYFNNYDYLEIHFRQEHYLCEDEACLARKFIVFATEFELKRHNAMEHGGRMSRSKRSALLQIPVSFQFRQINE HDRRGGGRGSHSNSSGYQMNMAIEDSLEPANAERSCDISSNAQTVSTHREEHEIDMIVNPFESLATTDSEPPSRYHHVLGWNTSRAPMEETSFPPLPLAP RSSQRRSRNGLGGLSGNTMAAHLSRQNMVKVLNSSRALPANNHPNSVASISYQSRPVSDSRVLSSSRSPSSSVLSTYTSSPQAGSSRANGLLVSSNFASS SRTSNSNSKVSQASAAPNPADRTSHKSLSSFPSLSATQVDNMSTSASPMLKVEDVQSANKALVEKIRAALEFDKDKFAAFKIISREYHRDIIDVAEYLAY VHQFGLSHLVLELARLCPKAEKQRELVEIYNFNVGGNGLSIDNGPSKSKKCSKKGKEKCDDNVISVSENIFSDSLRVEILPKDGNCGGKGKSKILVDKQA NLDLSREPKSEHAAQAAGVSLKKNVGAGGGGNKPRKKTTKFMKNRLGGTSTASLPDASNSDAGIDEKEEKADVNKDIAVVLPVHGVWKNGGGRKLVVMTQ NNRNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.013G004200 [exp]	0	1
AT2G43970			RNA-binding protein (.1.2)		Potri.017G007400 [exp]	3.60	0.7603
					Potri.006G276250 [exp]	4.58	0.7401
AT1G15910		FDM1	factor of DNA methylation 1, X...		Potri.003G181000 [exp]	12.48	0.6919
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	14.69	0.7584
AT1G05960			ARM repeat superfamily protein...		Potri.007G128000 [exp]	15.16	0.7000
					Potri.009G083702 [exp]	16.61	0.7498
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	18.57	0.7432
AT3G15280			unknown protein		Potri.001G398300 [exp]	18.97	0.7124
AT5G38600			Proline-rich spliceosome-assoc...		Potri.004G104400 [exp]	19.49	0.7278
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	28.93	0.7287

Compare expression of checked genes

Potri.013G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.