Plant FIBer expression Database

Potri.013G004300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G004800
[exp]
169 / 3e-56 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G004300.2 pacid=42812384 polypeptide=Potri.013G004300.2.p locus=Potri.013G004300 ID=Potri.013G004300.2.v4.1 annot-version=v4.1
ATGCCAAGTGTTGAGAGAAGTGCTAAGATGGAGAGAACTCAAAAGATGCTTCTGATCCTTGCCATTTTCATGTTGGTTCTTGCCTCAAATGTTGGAGCAG
GAAGGAAACTGAAGGACACCAAGGAGAAAGTTGACCACCCTCAGAACTATCTAGGGGGCTTCGGTACCAGTGGTGGTTTTATCCCAACTCCTAATGGCCC
AGTCTTTGCATTTGGGCCATCAGGGTTTTGCTCTTACCCTGGGGTTGGTTGTGTCAGGATCCCAGGTACTGGTGTCATTGGCTCACCACCATGA
AA sequence
>Potri.013G004300.2 pacid=42812384 polypeptide=Potri.013G004300.2.p locus=Potri.013G004300 ID=Potri.013G004300.2.v4.1 annot-version=v4.1
MPSVERSAKMERTQKMLLILAIFMLVLASNVGAGRKLKDTKEKVDHPQNYLGGFGTSGGFIPTPNGPVFAFGPSGFCSYPGVGCVRIPGTGVIGSPP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G004300
[exp]
0 1
AT4G21750 HD ATML1 MERISTEM LAYER 1, Homeobox-leu... Potri.011G025000
[exp]
7.28 0.8921 Pt-ATML1.1
AT3G48950 Pectin lyase-like superfamily ... Potri.017G145900
[exp]
10.39 0.8212
AT2G23060 Acyl-CoA N-acyltransferases (N... Potri.010G144700
[exp]
13.74 0.8726
AT5G03790 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeo... Potri.006G117700
[exp]
16.79 0.8696
AT4G00820 IQD17 IQ-domain 17 (.1) Potri.015G005900
[exp]
17.17 0.8698
AT2G26490 Transducin/WD40 repeat-like su... Potri.003G051100
[exp]
17.94 0.8689
Potri.007G000801
[exp]
20.34 0.7780
AT5G09970 CYP78A7 "cytochrome P450, family 78, s... Potri.007G081200
[exp]
20.78 0.8705 CYP78A21v1
AT1G76420 NAC NAC368, CUC3, A... CUP SHAPED COTYLEDON3, Arabido... Potri.002G005800
[exp]
23.87 0.8648
AT3G11480 BSMT1, ATBSMT1 S-adenosyl-L-methionine-depend... Potri.019G022002
[exp]
28.98 0.8548

Potri.013G004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.