Plant FIBer expression Database

ACLA.3 (Potri.013G004400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ACLA.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09430 790 / 0 ACLA-3 ATP-citrate lyase A-3 (.1)
AT1G60810 729 / 0 ACLA-2 ATP-citrate lyase A-2 (.1)
AT1G10670 725 / 0 ACLA-1 ATP-citrate lyase A-1 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G004900
[exp]
834 / 0 AT1G09430 795 / 0.0 ATP-citrate lyase A-3 (.1)
Potri.008G188900
[exp]
760 / 0 AT1G60810 725 / 0.0 ATP-citrate lyase A-2 (.1)
Potri.010G042700
[exp]
733 / 0 AT1G10670 716 / 0.0 ATP-citrate lyase A-1 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013032
[exp]
749 / 0 AT1G60810 766 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030897
[exp]
742 / 0 AT1G60810 761 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10030592
[exp]
698 / 0 AT1G60810 709 / 0.0 ATP-citrate lyase A-2 (.1)
Lus10029129
[exp]
613 / 0 AT1G60810 627 / 0.0 ATP-citrate lyase A-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0179 ATP-grasp PF08442 ATP-grasp_2 ATP-grasp domain
CL0506 Succ_CoA_synth PF16114 Citrate_bind ATP citrate lyase citrate-binding
Representative CDS sequence
>Potri.013G004400.1 pacid=42812366 polypeptide=Potri.013G004400.1.p locus=Potri.013G004400 ID=Potri.013G004400.1.v4.1 annot-version=v4.1
ATGGCAAGAAAGAAGATAAGAGAGTATGATTCCAAGAGACTCCTGAAAGAGCACTTGAAACGTCTCTCTGGTATTGATCTCCTGATCCGCTCTGCTCAGG
TGACAGAAGGTACAGATTTCACGGAGTTGACGAACCAGGAGCCATGGATTTCATCTACAAAATTGGTTGTGAAGCCCGACATGCTATTCGGAAAGCGTGG
GAAGAGTGGTTTGGTAGCTTTGAATTTAGATCTAGCTCAAGTTGCTGACTTTGTGAAGGCACGCCTTGGCGTTGAGGTTGAGATGGGTGGCTGTAAGGCA
CCAATAACTACCTTTATAGTCGAACCATTTGTTCCACATGACCAAGAGTTTTACTTTTCAATTGTCTCTGAAAGACTCGGCTGCACCATTAGCTTCTCAG
AATGTGGAGGTATTGAAATTGAGGAGAACTGGGATAAGGTTAAGACCATATTCCTCCCTACTGAAAAGCCAATGACACTGGAAGCATGTGCTCCTTTGAT
TGCTACACTTCCTCTGGAGATTCGAGGAAAAATTGTTGATTTCATCATCTGTGTCTTTTCTGTGTTTCAAGATCTGGACTTCAGTTTTCTAGAGATGAAT
CCATTTACACTGGTGAATGGGGAGCCATATCCACTGGATATGAGAGGAGAGTTGGACGACACTGCTGCTTTTAAGAACTTCAAGAAGTGGGGTAACATAG
AGTTTCCTCTGCCTTTTGGAAGAGTTCTGAGTTCTACTGAAAGCTTCATCCACTCACTGGATGAAAAGACAAGTGCATCTTTGAAATTCACTGTTTTGAA
CCAAAAAGGAAGAATCTGGACGATGGTAGCTGGAGGTGGTGCCAGTGTCATATATGCCGATACTGTTGGAGATTTGGGCTATGCATCAGAGCTTGGAAAC
TATGCAGAGTATAGTGGAGCTCCAAACGAGGAGGAGGTCTTGCAATATGCAAGAGTTGTCATTGATTGTGCAACTGCTGATCCTGATGGTCGCAAAAGAG
CCCTTCTCATTGGAGGAGGCATTGCTAACTTCACTGATGTTGCTGCTACTTTCAACGGTATCATACGAGCATTGAGGGAGAAGGAATCCAAGTTAAAGGC
AGCAAGAATGCACCTCTATGTCCGAAGAGGCGGTCCAAACTATCAGACTGGTTTGGCCAAGATGCGCACTCTGGGAGAGGAAGTGGGAGTACCTCTTGAG
GTTTATGGACCCGAGGCCACAATGACAAGCATCTGCAAGCAAGCCATTGATTGCATCATGTCTACGGCATAG
AA sequence
>Potri.013G004400.1 pacid=42812366 polypeptide=Potri.013G004400.1.p locus=Potri.013G004400 ID=Potri.013G004400.1.v4.1 annot-version=v4.1
MARKKIREYDSKRLLKEHLKRLSGIDLLIRSAQVTEGTDFTELTNQEPWISSTKLVVKPDMLFGKRGKSGLVALNLDLAQVADFVKARLGVEVEMGGCKA
PITTFIVEPFVPHDQEFYFSIVSERLGCTISFSECGGIEIEENWDKVKTIFLPTEKPMTLEACAPLIATLPLEIRGKIVDFIICVFSVFQDLDFSFLEMN
PFTLVNGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVLSSTESFIHSLDEKTSASLKFTVLNQKGRIWTMVAGGGASVIYADTVGDLGYASELGN
YAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHLYVRRGGPNYQTGLAKMRTLGEEVGVPLE
VYGPEATMTSICKQAIDCIMSTA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09430 ACLA-3 ATP-citrate lyase A-3 (.1) Potri.013G004400
[exp]
0 1 ACLA.3
AT1G53290 Galactosyltransferase family p... Potri.011G111700
[exp]
3.31 0.9604
AT5G26667 PYR6 P-loop containing nucleoside t... Potri.014G043300
[exp]
4.00 0.9475
AT4G27270 Quinone reductase family prote... Potri.001G410700
[exp]
4.89 0.9367 Pt-FQR1.1
AT5G41950 Tetratricopeptide repeat (TPR)... Potri.003G146200
[exp]
5.47 0.9566
AT5G05010 clathrin adaptor complexes med... Potri.012G125500
[exp]
5.83 0.9580
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.014G116500
[exp]
6.00 0.9534 Pt-ARF1.1
AT4G27720 Major facilitator superfamily ... Potri.015G008100
[exp]
6.24 0.9290
AT3G12110 ACT11 actin-11 (.1) Potri.008G055500
[exp]
7.74 0.9517 ACT4,Pt-PEAC14.2
AT3G10700 GalAK galacturonic acid kinase (.1) Potri.006G070500
[exp]
9.94 0.9474
AT1G09330 ECHIDNA, ECH unknown protein Potri.005G010400
[exp]
10.67 0.9488

Potri.013G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.