Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GTC904
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10710 1461 / 0 SPT16 global transcription factor C (.1) AT4G10670 478 / 5e-160 GTC2 GTC2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005300 [exp] 1812 / 0 AT4G10710 1381 / 0.0 global transcription factor C (.1) Potri.013G004500 [exp] 1561 / 0 AT4G10710 1521 / 0.0 global transcription factor C (.1) Potri.005G005000 [exp] 1556 / 0 AT4G10710 1535 / 0.0 global transcription factor C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039410 [exp] 1333 / 0 AT4G10710 1389 / 0.0 global transcription factor C (.1) Lus10039490 [exp] 730 / 0 AT4G10710 801 / 0.0 global transcription factor C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24 CL0266 [poplar] [flax] PH PF08512 [poplar] [flax] Rtt106 Histone chaperone Rttp106-like CL0266 [poplar] [flax] PH PF08644 [poplar] [flax] SPT16 FACT complex subunit (SPT16/CDC68) CL0356 [poplar] [flax] AMP_N-like PF14826 [poplar] [flax] FACT-Spt16_Nlob FACT complex subunit SPT16 N-terminal lobe domain
Representative CDS sequence Show only first row Show all	>Potri.013G004600.2 pacid=42811976 polypeptide=Potri.013G004600.2.p locus=Potri.013G004600 ID=Potri.013G004600.2.v4.1 annot-version=v4.1 ATGACTGAAAATAGGAATGCTAATGCAAAACCCTCAAATGGGAAGCCTACAGGAGCTGCCAGTCCTTACGCGATAGATTTGGATAACTTCACCAAGCGCT TGAACATGTTGTATTCACATTGGAAGGAACACCATAGTGACCTATGGGGTGCTTCTGATGCTCTTGCTATAGCAACACCTCCGGCTTCTGAGGATCTCCG GTATCTGAAGTCATCAGCACTGAACATTTGGTTGGTTGGATATGAGTTCCCAGAGACGATTATGGTCTTCCTGAAGAAGCAGATCCTTTTCTTATGTAGC CAGAAAAAGGCTTCTTTGCTTGATGTTGTGAAGAAGTCTGCCAAAGAGGCTGTGGGTGTTGAGGTTGTGATACTCGTGAAGACCAAAAATGATGATGGAA GTGGTTTGATGGATATCATTTTTCATGCTGTCCTAGCTCAGTCAAATTCTAATGGGCATAATACTCCTGTCATTGGGCGTATAGCAAGAGAAAGTCCTGA AGGGAAGCTTTTGGAGACATGGGATGAAAAGGTAAAGAACGTTAATTGTGAACTAAGAGATGTAACAAATGGGTTCTCGGACTTATTTGCTGTCAAAGAC AGCACTGAGCTTACAAATGTAAGGAAAGCAGCGTTTTTGAGTTCTTCAGTAATGAAGCAGTTTGTGGTGCCAAAGCTTGAAAAGGTCATTGATGAGGAGA AGAAGATCTCCCATTCTTCATTGATGGGTGACACAGAGAAGGCAATATTGGAACCTGCAAGAATTAAGGTAAAGCTGAAGGCAGAGAATGTCGATATTTG CTATCCTCCAGTTTTTCAGAGTGGAGGAGAGTTTGATCTGAAACCGAGTGCTGCAAGCAATGATGAGAACCTCTACTATGACTCTACTAGTGTGATCATA TGCGCAATCGGGTCTCGATACAACAGCTACTGCTCAAATGTTGCAAGAACTTATCTGATTGATGCCAATCCGATGCAGAGCAAGGCATATGAGATCCTCC TTCAGGCCCATGAAGCAGCTATCAGTGCATTGAAGCCTGGGAACATGGTCAGTGCTGTGTATCAAGCAGCGCTCTCTGTGGTTGAGAAGGATGCTCCCGA ATTAACTGCAAACTTGACGAAAACTGCTGGAACTGGAATCGGCCTTGAGTTTCGTGAGTCAGGGCTTAGTCTTAATTCCAAGAATGATCAAGTTCTGAGA CAAGGGATGGTTTTCAATGTGTCTCTTGGCTTTCAGCATTTGCAGGCAGAGACCAAAAACCCAAAGACCCAGAAATATTCTGTCTTACTTGCAGATACAG TGATTGTTGGTGAGAAGTTCGCAGATGTGGTGACTTCAAAGTGTACTAAAGCTGTTAAAGATGTGGCATACTCATTCAATGAGGATGATCAGGAAGAAGA TCGGCCAAAAGTCAAGCCTGAACGTAGAGGGAGTGAGACCACCTTGTCTAAGGCAACACTCAGGTCAGACAACCATGAAATGTCAAAGAAGGAGCTACGA AGGCAGCACCAGGCAGAGCTTGCCCGCCAAAAGAATGAAGAGACTGCGAGGAGGCTTGCTGGTGGGGGTTCTGCTGCAACAGATAATCGAGGTGGTGCGA AGACAATCGGTGATTTAATTGCATATAAGAATGTCAATGATCTCCCCCCTCCTCGAGACTTTATGATTCAGATTGACCAGAGGAATGAAGCCATAATATT ACCAATCCATGGAAGCATGGTTCCTTTCCATGTTGCCACTGTGAAGAGTGTGTCTAGTCAGCAGGATAATAACCGAACTTGCTACATACGGATAATATTT AATGTGCCTGGCACCCCTTTTAACCCTCATGATGCAAACTCCCTTAAGTTTCAAGGGTCAATATACTTGAAGGAGGTTTCGTTTCGTTCGAAGGACTCTA GACATATAAGTGAAGTGGTACAGCAGATTAAAACACTACGTCGACAGGTAACTTCCAGAGAATCTGAGAGGGCTGAGAGAGCGACCTTAGTTAGTCAGGA AAAGCTTCAACTCTCATCTTCCAAATTCAAGCCAATGAAATTGTTAGATCTATGGGTCCGTCCTCCTTTTGGTGGTCGTGGAAGAAAATTGACTGGTTCA CTTGAATCCCACACAAATGGCTTGCGCTATTCAACTTCAAGGCCTGATGAACGTGTTGATGTAATGTTTGGTAACATTAAGCATGCATTCTTTCAGCCAG CAGAGAAGGAAATGATTACTCTCCTGCACTTTCATTTGCATAATCACATAATGGTGGGGAACAAAAAGACCAAGGATGTGCAATTTTATATCGAGGTAAT CGATGTGGTCCAGACAATTGGAGGGAGTAAAAGATCAGCCTATGACCCTGATGAGATCGAGGAAGAACAACGCGAGAGGGATCGAAAGAATAAAATAAAC ATGGACTTCCAGAACTTTGTGAACCGGGTGAATGATGTATGGAGCCAACCTCAATTCAAAGCACTTGACCTTGAGTTTGATCAGCCTTTAAGAGAGCTTG GGTTCCATGGGGTTCCCCACAAAGTTTCAGCTTTCATAGTTCCAACATCGAGTTGCTTGGTTGAGCTGATAGAGACACCTTGTGTGGTGATAACTCTGAG TGAGATTGAGATAGTTAATCTGGAGAGAGTTGGCCTTGGACAGAAGAATTTTGATATGACTGTTGTCTTCAAGGACTTCAAACGGGATGTCCTTCGAATA GACTCTATCCCCTCTACATCACTGGATGGCATAAAGGAGTGGCTTAACACCACTGACCTCAAGTATTACGAGAGTAGATTAAATCTCAATTGGCGACCTA TACTGAAAACTATCACTGATGATCCGGAAAAATTCATAGAGGATGGTGGGTGGGAATTTTTAAACATGGAAGTTAGTGATTCAGATTCTGAAAACTCAGC AGACTCAGACCAAGGGTACATGCCTTCAGATGTGCAATCTGACTCAGGTTCCGATGATGAAGATGATTTAAGTGAGTCTTTGGTGGAATCCGAGGATGAT GAGGAAGAGGACTCTGAGGAAGACTCAGAGGAGGAGGAAGGAAAGACATGGGAAGAGTTGGAGAGGGAAGCAAGTTATGCTGACAGGGAAAAGGGGAATG ATTCAGATAGTGAGGAGGAGAGAAAAAGAAGGAAGATCAAGGCATTTGGCAAGGCTCGAGAGCCAGCTCGAGCTCCCACTCGACCATCAGCTCGGCCACC AGCTCGGCCACCAGCTCGAGCTCCTGCTCGACCATCAGCTAGGCCGCCAGCTCGGCCAGTAACCCGACAACCTGATAGAAGAAATGTGAGCAGCGGTCTT CACAAGAGACCCAAGCTAAGGTGA
AA sequence Show only first row Show all	>Potri.013G004600.2 pacid=42811976 polypeptide=Potri.013G004600.2.p locus=Potri.013G004600 ID=Potri.013G004600.2.v4.1 annot-version=v4.1 MTENRNANAKPSNGKPTGAASPYAIDLDNFTKRLNMLYSHWKEHHSDLWGASDALAIATPPASEDLRYLKSSALNIWLVGYEFPETIMVFLKKQILFLCS QKKASLLDVVKKSAKEAVGVEVVILVKTKNDDGSGLMDIIFHAVLAQSNSNGHNTPVIGRIARESPEGKLLETWDEKVKNVNCELRDVTNGFSDLFAVKD STELTNVRKAAFLSSSVMKQFVVPKLEKVIDEEKKISHSSLMGDTEKAILEPARIKVKLKAENVDICYPPVFQSGGEFDLKPSAASNDENLYYDSTSVII CAIGSRYNSYCSNVARTYLIDANPMQSKAYEILLQAHEAAISALKPGNMVSAVYQAALSVVEKDAPELTANLTKTAGTGIGLEFRESGLSLNSKNDQVLR QGMVFNVSLGFQHLQAETKNPKTQKYSVLLADTVIVGEKFADVVTSKCTKAVKDVAYSFNEDDQEEDRPKVKPERRGSETTLSKATLRSDNHEMSKKELR RQHQAELARQKNEETARRLAGGGSAATDNRGGAKTIGDLIAYKNVNDLPPPRDFMIQIDQRNEAIILPIHGSMVPFHVATVKSVSSQQDNNRTCYIRIIF NVPGTPFNPHDANSLKFQGSIYLKEVSFRSKDSRHISEVVQQIKTLRRQVTSRESERAERATLVSQEKLQLSSSKFKPMKLLDLWVRPPFGGRGRKLTGS LESHTNGLRYSTSRPDERVDVMFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYIEVIDVVQTIGGSKRSAYDPDEIEEEQRERDRKNKIN MDFQNFVNRVNDVWSQPQFKALDLEFDQPLRELGFHGVPHKVSAFIVPTSSCLVELIETPCVVITLSEIEIVNLERVGLGQKNFDMTVVFKDFKRDVLRI DSIPSTSLDGIKEWLNTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEVSDSDSENSADSDQGYMPSDVQSDSGSDDEDDLSESLVESEDD EEEDSEEDSEEEEGKTWEELEREASYADREKGNDSDSEEERKRRKIKAFGKAREPARAPTRPSARPPARPPARAPARPSARPPARPVTRQPDRRNVSSGL HKRPKLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004600 [exp]	0	1	GTC904
AT1G58250		SAB	SABRE, Golgi-body localisation...		Potri.002G110700 [exp]	14.56	0.6291	SAB.2
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.004G229300 [exp]	17.32	0.5695	CAND1.3
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.019G080800 [exp]	22.51	0.5649
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	25.45	0.5962
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	28.40	0.6038	Pt-UBP12.2
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	41.47	0.5234
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.019G123700 [exp]	57.54	0.5528
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	60.09	0.5647
AT2G47960			unknown protein		Potri.004G040500 [exp]	69.28	0.5404
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	74.16	0.5579

Compare expression of checked genes

Potri.013G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.