Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26749 110 / 2e-31 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031439 [exp] 118 / 1e-34 AT5G26749 143 / 1e-44 C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10001520 [exp] 117 / 6e-34 AT5G26749 129 / 6e-39 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0361 [poplar] [flax] C2H2-zf PF06220 [poplar] [flax] zf-U1 U1 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.013G004801.1 pacid=42811989 polypeptide=Potri.013G004801.1.p locus=Potri.013G004801 ID=Potri.013G004801.1.v4.1 annot-version=v4.1 ATGCCCGTAGGGAAATACTACTGCGACTACTGCGACAAGCAATTCCAAGACACCCCACATGCTCGAAAGCGCCATCTTCAAAGCTCCTCTCATTTACGCG CCAAATCTCTCTGGTTCAGCAGAAACAGCAACAGCAACACCCTCAATTCCAATAACACTGATGCTGGTGGCTTTGTTAAGGGACTCTGCAACCGCTTTGT CAAAACGGGTTTTTGTCCTTATGGAGATTCTTGCAAGTATTTGCATACTAATTTTGCTACTAGTCAAGGAACTGCTTTCAAGGATAATGTTCAGTCACCA ACTATGCCTGGAAATCAATTGGCTGGGGGCAGTTCTTTTCCAGCAGGTGTTGCGGTGAGAGAGAGCATGGGAATGTCCTGGGGTAACCTGCCTCCATCAC TAAAGCCTCCTCCAGAGGGTGGTTATCCGCCTCTTCCGTTCGTGGATTGGGGATAG
AA sequence Show only first row Show all	>Potri.013G004801.1 pacid=42811989 polypeptide=Potri.013G004801.1.p locus=Potri.013G004801 ID=Potri.013G004801.1.v4.1 annot-version=v4.1 MPVGKYYCDYCDKQFQDTPHARKRHLQSSSHLRAKSLWFSRNSNSNTLNSNNTDAGGFVKGLCNRFVKTGFCPYGDSCKYLHTNFATSQGTAFKDNVQSP TMPGNQLAGGSSFPAGVAVRESMGMSWGNLPPSLKPPPEGGYPPLPFVDWG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26749			C2H2 and C2HC zinc fingers sup...		Potri.013G004801 [exp]	0	1
AT5G11480			P-loop containing nucleoside t...		Potri.018G037000 [exp]	3.00	0.9270
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.005G092900 [exp]	10.00	0.9199
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108301 [exp]	18.22	0.8949
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	22.71	0.9015
AT5G24650			Mitochondrial import inner mem...		Potri.015G000600 [exp]	27.49	0.8687
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.004G059400 [exp]	27.82	0.8890
AT4G32605			Mitochondrial glycoprotein fam...		Potri.008G015600 [exp]	27.85	0.8802
AT1G52730			Transducin/WD40 repeat-like su...		Potri.001G174600 [exp]	35.07	0.8895
AT3G44380			Late embryogenesis abundant (L...		Potri.001G218400 [exp]	39.10	0.8732
AT4G24500			hydroxyproline-rich glycoprote...		Potri.005G153300 [exp]	39.24	0.8772

Compare expression of checked genes

Potri.013G004801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.