Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02460 561 / 0 Pectin lyase-like superfamily protein (.1) AT1G56710 536 / 0 Pectin lyase-like superfamily protein (.1) AT1G48100 518 / 0 Pectin lyase-like superfamily protein (.1) AT4G01890 509 / 1e-178 Pectin lyase-like superfamily protein (.1) AT5G14650 345 / 5e-115 Pectin lyase-like superfamily protein (.1) AT1G60590 345 / 2e-113 Pectin lyase-like superfamily protein (.1) AT1G10640 332 / 2e-108 Pectin lyase-like superfamily protein (.1) AT1G80170 307 / 4e-100 Pectin lyase-like superfamily protein (.1) AT3G26610 306 / 4e-99 Pectin lyase-like superfamily protein (.1) AT1G70500 295 / 6e-95 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005500 [exp] 769 / 0 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 602 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 587 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 530 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 525 / 0 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 362 / 1e-120 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 338 / 4e-111 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 331 / 2e-108 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G044001 [exp] 310 / 2e-100 AT3G26610 579 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009994 [exp] 532 / 0 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 525 / 0 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 490 / 5e-171 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 485 / 5e-169 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 338 / 7e-111 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 332 / 1e-108 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 325 / 8e-106 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 315 / 1e-102 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 294 / 2e-94 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 289 / 3e-92 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.013G005000.1 pacid=42812631 polypeptide=Potri.013G005000.1.p locus=Potri.013G005000 ID=Potri.013G005000.1.v4.1 annot-version=v4.1 ATGGCAACCATGACATTGTCTAAAATTCTCCTTTTGGCCTTCGCTTTCTTCTTTACATACATTGAAGGAAGAGTTCATGGAAAAACTAAACCAAAACACT TGCACATTGTTTCTCTCATTTCACTACCACCTGCTCCTGCTCCTGCCCCTGCTCCTCAGGCTGCCAGTCCAAGTTACTATACAGATTCTCCAAGTCCTGG TCCTAGCCCTAATCTTGTTCGAAGTCTTGCCAACGTCTACAATGTACTATCTTTTGGTGCTGTTGGTGATGGTGACACAGATGATACACAAGCATTCAAG ATGGCTTGGGACACTGCTTGCTTTCAGAATGAACCAGCCATTCTACTTGCTCCTGATGACTATTCTTTCATGATACAGCCTACTGTCTTTACCGGACCTT GTAAAACTAGCCTTGTGTTCCAGATTGATGGAACTATAATGCCACCAGATGGGCCTGAATCATGGCCAAGTAAGACGAACAAGAGACAATGGCTAGTGTT TTACAAGATCGATGGAATGTCAATGCAAGGAGGTGGTGTTATAGATGGCAGAGGAGAGAAATGGTGGAATCTACCCTGCAAGCCTCACAAAGGGCCTAAT GGCGCAACACTTCCTGGCCCTTGTGATAGCCCAGTTGCTATGAGGTTTTTCATGAGCTCTAATTTGATAGTCCAAGGACTTGAAGTGAAGAACAGTCCCC AATTCCATTTTCGGTTTGATAACTGTCAAGATGTCACTGTACAAATGCTCAGCATTAAATCACCACCTCTAAGCCCAAATACAGATGGGATTCACATAGA GAACACAAACAATGTCCAAATATACAATTCAGTCATATCCAATGGTGATGACTGTGTATCAATTGGAGCTGGTTGTCATAATGTCGACATAAAGAACATT ACCTGTGGTCCAAGCCATGGCATAAGCATTGGCAGCCTTGGAATCGGCAACTCGAGGGCATGCGTGTCGAACATCACGGTGAGAGATTCGGTAATCAAGC ATTCTGATAATGGTGTCCGGATTAAGACATGGCAGGGAGGATATGGTTCTGTATCTAAAATCTCTTTCCACAACATTAACATGGAAACGGTCCGCAATCC AATAATCATAGACCAATACTACTGCCAGACCAAGAACTGCACTAACCAAACAAGTGCAGTTCACATATCTGATATTTTGTACACAAGCATTAAGGGTACA TATGATGTTAGGAGTCCACCCTTGCACTTGGCTTGCAGTGATTCAGTCCCATGCACTAACCTCGAGTTAGCAGAAATAGAGTTGCTTCCTGCTCATGGCC AATTTGTGGCAGATCCATTTTGCTGGAATGCTTATGGGGCAATGCAGAATCTTACCATCCCGCCAATTTCTTGCTTGCTGGATGGAATCCCACAATACAT AGGGCAAAACACTATAGATCAGTACTGTCAGAATAATTTGTATTAG
AA sequence Show only first row Show all	>Potri.013G005000.1 pacid=42812631 polypeptide=Potri.013G005000.1.p locus=Potri.013G005000 ID=Potri.013G005000.1.v4.1 annot-version=v4.1 MATMTLSKILLLAFAFFFTYIEGRVHGKTKPKHLHIVSLISLPPAPAPAPAPQAASPSYYTDSPSPGPSPNLVRSLANVYNVLSFGAVGDGDTDDTQAFK MAWDTACFQNEPAILLAPDDYSFMIQPTVFTGPCKTSLVFQIDGTIMPPDGPESWPSKTNKRQWLVFYKIDGMSMQGGGVIDGRGEKWWNLPCKPHKGPN GATLPGPCDSPVAMRFFMSSNLIVQGLEVKNSPQFHFRFDNCQDVTVQMLSIKSPPLSPNTDGIHIENTNNVQIYNSVISNGDDCVSIGAGCHNVDIKNI TCGPSHGISIGSLGIGNSRACVSNITVRDSVIKHSDNGVRIKTWQGGYGSVSKISFHNINMETVRNPIIIDQYYCQTKNCTNQTSAVHISDILYTSIKGT YDVRSPPLHLACSDSVPCTNLELAEIELLPAHGQFVADPFCWNAYGAMQNLTIPPISCLLDGIPQYIGQNTIDQYCQNNLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02460			Pectin lyase-like superfamily ...		Potri.013G005000 [exp]	0	1
AT4G25760		ATGDU2	glutamine dumper 2 (.1)		Potri.004G108560 [exp]	15.81	0.6634
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	28.14	0.7102
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.016G004100 [exp]	28.49	0.7044
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	68.41	0.6565
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	77.92	0.6648
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	176.60	0.6234
AT5G10990			SAUR-like auxin-responsive pro...		Potri.004G164300 [exp]	180.44	0.6235

Compare expression of checked genes

Potri.013G005000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.