Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56700 344 / 8e-122 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) AT1G23440 306 / 1e-106 Peptidase C15, pyroglutamyl peptidase I-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G005800 [exp] 431 / 4e-156 AT1G56700 335 / 5e-118 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001521 [exp] 347 / 2e-121 AT1G56700 312 / 2e-107 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Lus10029137 [exp] 278 / 1e-95 AT1G23440 311 / 8e-109 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10013026 [exp] 274 / 5e-94 AT1G23440 309 / 6e-108 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10031438 [exp] 255 / 8e-83 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0379 [poplar] [flax] PgaPase PF01470 [poplar] [flax] Peptidase_C15 Pyroglutamyl peptidase
Representative CDS sequence Show only first row Show all	>Potri.013G005100.4 pacid=42812752 polypeptide=Potri.013G005100.4.p locus=Potri.013G005100 ID=Potri.013G005100.4.v4.1 annot-version=v4.1 ATGGGGTCTGAAGGACTTCCAGCTGTAACAATCCATGTGACAGGATTCAAGAAATTCCATGGAGTAGCTGAAAACCCAACTGAGACAATTGTTAGTAATC TAAAAGAGTACATGAAGAAGAAGGGCATGCCAAAAGGTGTGGTCCTGGGGAGTTGCAATGTTCTTGAGGCTGCAGGACAAGGCGGAGTTTCTCCACTTTA CCAGACATTTCAATCTGCCATAAACTCAAAGGATTATGAATCTTCAAGTCCTGGAAGAATTATTTGGCTACACTTCGGGGTCAATAGTGGGGCAACAAGA TTTGCCATTGAGCATCAAGCTGTCAATGAAGCTACTTTTCGCTGTCCGGATGAGATGGGATGGAAACCACAGAAAGTACCCATCATTCCTTCAGATGGTG GAATTTCACGAGTTCGAGAGACTACTCTTCCTGTTGAGGAGATCACAAAGTCCTTGGCAAAGAAAGGTTATGAGGTGATGACATCCGATGATGCAGGCCG ATTTGTGTGCAACTATGTTTACTACCATTCCCTTCGGTTTGCAGAGCAAAATGGGACAAAGTCTCTCTTTGTGCATGTACCTCTTTTCTTGACCATAGAC GAGGAGACGCAGATGCAATTTGCTGCTTCCTTGTTGGAGGTACTTGCTTCTTTGTATTAG
AA sequence Show only first row Show all	>Potri.013G005100.4 pacid=42812752 polypeptide=Potri.013G005100.4.p locus=Potri.013G005100 ID=Potri.013G005100.4.v4.1 annot-version=v4.1 MGSEGLPAVTIHVTGFKKFHGVAENPTETIVSNLKEYMKKKGMPKGVVLGSCNVLEAAGQGGVSPLYQTFQSAINSKDYESSSPGRIIWLHFGVNSGATR FAIEHQAVNEATFRCPDEMGWKPQKVPIIPSDGGISRVRETTLPVEEITKSLAKKGYEVMTSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTID EETQMQFAASLLEVLASLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.013G005100 [exp]	0	1
AT4G17486			PPPDE putative thiol peptidase...		Potri.006G154400 [exp]	3.00	0.9236
AT1G67910			unknown protein		Potri.010G046700 [exp]	3.46	0.9025
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Potri.002G095600 [exp]	4.24	0.9135	ANNAT1.1
AT2G32980			unknown protein		Potri.002G225100 [exp]	5.91	0.8899
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.007G076900 [exp]	9.16	0.8984
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.013G055100 [exp]	20.49	0.8792
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.009G031200 [exp]	27.47	0.8947
AT5G49540			Rab5-interacting family protei...		Potri.008G102200 [exp]	28.14	0.8460
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007300 [exp]	29.29	0.8577
AT4G21450			PapD-like superfamily protein ...		Potri.013G147800 [exp]	29.94	0.8852

Compare expression of checked genes

Potri.013G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.