Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09420 816 / 0 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2) AT5G13110 572 / 0 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 568 / 0 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 556 / 0 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT3G27300 380 / 2e-125 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G40760 367 / 2e-120 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168000 [exp] 564 / 0 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.014G166800 [exp] 557 / 0 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 546 / 0 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.017G070200 [exp] 363 / 4e-119 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.001G337400 [exp] 361 / 3e-118 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.005G005866 [exp] 241 / 6e-76 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006386 [exp] 564 / 0 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 558 / 0 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 556 / 0 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 431 / 4e-146 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10014615 [exp] 357 / 9e-117 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 360 / 6e-114 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 332 / 2e-107 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10012339 [exp] 118 / 1e-31 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00479 [poplar] [flax] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02781 [poplar] [flax] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G005200.1 pacid=42812725 polypeptide=Potri.013G005200.1.p locus=Potri.013G005200 ID=Potri.013G005200.1.v4.1 annot-version=v4.1 ATGTCACTTTCTTTTCCAACTTCATCAATACCCTCTTGGGATTCTTCAACTTCTAGACCCATTCCTCAATGCTCAAGTTCTCTTAATGTCTCTGCTGGTA GCTTGCAGGTGGTGGCAAAGAATTCTGGAGGAGGTGCTGGTTTATGTAGAAGTTTTTGTGGATTAAAGCTATGGGTGATTGAAAGATTCAATCTCTGGAA AAAGAATAGGGAGTTTGGACCTTTGAAGGAGTTCATGACTATTAAGAATCAAAGTTTGCCAGATGATTCTGCTGAAGAGACTAAAAGACTTTCGAAATCT GAAGAAAGTTCATTGCACGAGCTTCAAGCTGATCCCTTCACAAATGTGGTGCCTTCACGAAGTCATTCCTTGAATTATGCGACTGAGGGTGGTAGAGGGC CTTCTCTCTGCATTGCAGTTATTGGAGCTACTGGTGAGCTTGCAAGGGCGAAGATTTTTCCAGCATTATTTGCTCTGTATTATAGTGGCTTTCTACCTGA GGATGTTGTCATCTTCGGTTATTCAAGAAAGGATTTAACAGACGAAGATCTGAGATCCATTATAGCTTCAACTTTGACTTGTCGCATTGATCATCAACAG AACTGTGGTGACAAAATGGAGGCTTTTCTCAGCAAAACTTACTATCTCAATGGAGGTTATGATAACTGTGTCGGGATGTCAAAGCTAAATGCCAGAATGG AGCAAATTGAGGGGGGATCTAAAGCAAACAGGATATTCTACCTATCTGTGCCACAAGAAGCACTTCTTGATGTTGCATCCTGTCTAGCTGATAATGCCCA AACTCGTAAGGGCTGGAATCGGATAATAATTGAGAAACCTTTTGGGTTTGATGCACTGTCTTCTCAACAATTCACAAAGTCTCTTCTCTCTAAGTTTGAG GAGAAGCAGTTATACAGGATAGATCATCTCTTAGGAAGGAACCTCATTGAGAACCTCACAGTGTTAAGGTTCTCTAATCTGGTCTTTGAGCCATTATGGA GCCGAACTTATATACGCAATATACAGATCATTTTGTCAGAAGACTTACACTCGCAGACAAGAAGGTATTTTGATGGTTATGGGATCATTAGGGACATAGT GCACAGCCATATACTTCAGACAATAGCATTACTTGCCATGGAGCCACCAATAAGTCTTGATGGAGAAGATATTAGAAATGAAAAGGTCAAGGTTCTAAGA TCAATCCGCAGATTGGATCCTAGTGATGTCATTCTTGGTCAATATAAATCTACTTCTGGAGACAAAGTAAATTTAAACAATTTGACACCAACCTTCTTCG CTGCTGCGTTATACATCGATAATGCACGCTGGGATGGTGTGCCTTTTCTAATTAAAACTGGCCTGGGACTCATCAAACACAGAGTGGAGATACGTATAAA TTTCCATAATGTCCCAGGAAACCTTTATCGTGAACGCCTTGGGCATAACGTTGATCTGGCTACTAATGAGCTGATTCTGAGTGATGCACCTGATGAAGCT ATCCTGGTCAAGATTAATAATAAGATTCCAGGACTAGGCTTGCAGTTGGATGCTTCTGAACTCAACTTGCTCTATAAGGACAAGTATAGTGCGGAGGTGC CCGATTCATATGAGCATCTTCTTCTTGATGTCATTGATGGAGACAACCATCTCTTCATGAGAAGCGATGAGCTTGCAGCTGCATGGAATATTCTAACTCC AATTCTACAGGAAATAGACAAGAACCATGCAACACCAGAACTCTATGAAGTGGGAGGTAGAGGTCCAATTGGACCATATTATCTTTATGCAAAACATGGG GTTCGGTGGATAGACGACTGA
AA sequence Show only first row Show all	>Potri.013G005200.1 pacid=42812725 polypeptide=Potri.013G005200.1.p locus=Potri.013G005200 ID=Potri.013G005200.1.v4.1 annot-version=v4.1 MSLSFPTSSIPSWDSSTSRPIPQCSSSLNVSAGSLQVVAKNSGGGAGLCRSFCGLKLWVIERFNLWKKNREFGPLKEFMTIKNQSLPDDSAEETKRLSKS EESSLHELQADPFTNVVPSRSHSLNYATEGGRGPSLCIAVIGATGELARAKIFPALFALYYSGFLPEDVVIFGYSRKDLTDEDLRSIIASTLTCRIDHQQ NCGDKMEAFLSKTYYLNGGYDNCVGMSKLNARMEQIEGGSKANRIFYLSVPQEALLDVASCLADNAQTRKGWNRIIIEKPFGFDALSSQQFTKSLLSKFE EKQLYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIRNIQIILSEDLHSQTRRYFDGYGIIRDIVHSHILQTIALLAMEPPISLDGEDIRNEKVKVLR SIRRLDPSDVILGQYKSTSGDKVNLNNLTPTFFAAALYIDNARWDGVPFLIKTGLGLIKHRVEIRINFHNVPGNLYRERLGHNVDLATNELILSDAPDEA ILVKINNKIPGLGLQLDASELNLLYKDKYSAEVPDSYEHLLLDVIDGDNHLFMRSDELAAAWNILTPILQEIDKNHATPELYEVGGRGPIGPYYLYAKHG VRWIDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09420		G6PD4	glucose-6-phosphate dehydrogen...		Potri.013G005200 [exp]	0	1
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Potri.010G142100 [exp]	4.89	0.8257
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.007G100200 [exp]	9.79	0.8630
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	12.56	0.8570
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	13.71	0.8525	Pt-DEGP2.2
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	16.52	0.8540
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	34.89	0.8098
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048200 [exp]	40.09	0.8129
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	41.10	0.8256
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	41.78	0.8350
AT3G10690		GYRA	DNA GYRASE A (.1)		Potri.010G247000 [exp]	42.03	0.7952

Compare expression of checked genes

Potri.013G005200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.