Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14670 373 / 3e-134 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G10630 372 / 5e-134 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 371 / 1e-133 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G70490 370 / 3e-133 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 370 / 3e-133 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 368 / 2e-132 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G15310 263 / 2e-90 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 249 / 2e-85 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 239 / 4e-81 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 237 / 2e-80 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005600 [exp] 374 / 1e-134 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 374 / 1e-134 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 372 / 4e-134 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 372 / 4e-134 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 372 / 4e-134 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 365 / 2e-131 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 364 / 6e-131 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.005G142100 [exp] 337 / 4e-120 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.001G301200 [exp] 282 / 3e-98 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030884 [exp] 372 / 7e-134 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 375 / 8e-134 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 373 / 9e-134 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 371 / 1e-133 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 372 / 2e-129 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 374 / 1e-123 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10013020 [exp] 313 / 8e-108 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10002817 [exp] 266 / 4e-92 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10027870 [exp] 241 / 4e-82 AT1G10630 241 / 2e-82 ADP-ribosylation factor A1F (.1) Lus10009571 [exp] 239 / 4e-81 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF09439 [poplar] [flax] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Potri.013G005500.7 pacid=42812532 polypeptide=Potri.013G005500.7.p locus=Potri.013G005500 ID=Potri.013G005500.7.v4.1 annot-version=v4.1 ATGGGGCTTTCATTCACTAAGCTTTTTAGCCGTCTTTTTGCCAAGAAAGAAATGAGAATTCTCATGGTGGGTCTTGATGCTGCTGGTAAGACTACCATCT TGTACAAGCTCAAGCTTGGAGAGATTGTCACCACTATTCCTACAATTGGGTTTAATGTGGAGACTGTAGAATACAAGAACATAAGCTTCACTGTCTGGGA TGTTGGTGGCCAGGACAAGATCCGACCATTGTGGAGGCATTATTTCCAAAACACTCAAGGGCTCATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTG GTTGAAGCTAGGGATGAGCTGCACCGGATGTTGAATGAGGATGAATTGAGGGATGCTGTGCTACTTGTGTTTGCAAACAAGCAAGATCTTCCAAATGCTA TGAATGCTGCTGAAATTACAGATAAGCTTGGTCTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACCTGTGCCACTTCTGGTGAAGGTCTCTA TGAGGGACTGGACTGGCTCTCCAACAACATTGCTAGCAAGGTAGGGTCCTAA
AA sequence Show only first row Show all	>Potri.013G005500.7 pacid=42812532 polypeptide=Potri.013G005500.7.p locus=Potri.013G005500 ID=Potri.013G005500.7.v4.1 annot-version=v4.1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Potri.013G005500 [exp]	0	1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	2.00	0.8680
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	3.46	0.8725
AT5G20165			unknown protein		Potri.008G176801 [exp]	4.47	0.8350
AT4G27660			unknown protein		Potri.012G006501 [exp]	4.89	0.8506
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.008G130300 [exp]	4.89	0.8141
AT3G18430			Calcium-binding EF-hand family...		Potri.018G103600 [exp]	5.47	0.7709
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.019G039200 [exp]	7.07	0.8235	Pt-UBC1.2,HUPB903
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	8.06	0.8088
AT4G09810			Nucleotide-sugar transporter f...		Potri.002G064700 [exp]	8.94	0.8259
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.019G053800 [exp]	11.87	0.7572

Compare expression of checked genes

Potri.013G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.