Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10630 374 / 7e-135 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 373 / 2e-134 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G70490 372 / 5e-134 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 372 / 5e-134 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 371 / 2e-133 ATARFA1B ADP-ribosylation factor A1B (.1) AT3G62290 370 / 2e-133 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G15310 263 / 2e-90 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G24765 248 / 5e-85 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT5G17060 239 / 3e-81 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 237 / 2e-80 ATARFB1C ADP-ribosylation factor B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007300 [exp] 375 / 2e-135 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 374 / 8e-135 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 374 / 8e-135 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 374 / 8e-135 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 374 / 1e-134 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 367 / 3e-132 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 366 / 9e-132 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.005G142100 [exp] 339 / 6e-121 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.001G301200 [exp] 284 / 4e-99 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001524 [exp] 373 / 8e-134 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 374 / 3e-133 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 371 / 3e-133 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 369 / 7e-133 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 372 / 9e-130 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 373 / 4e-123 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10013020 [exp] 313 / 8e-108 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10002817 [exp] 266 / 3e-92 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10027870 [exp] 241 / 2e-82 AT1G10630 241 / 2e-82 ADP-ribosylation factor A1F (.1) Lus10009571 [exp] 239 / 3e-81 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF09439 [poplar] [flax] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Potri.013G005600.2 pacid=42811787 polypeptide=Potri.013G005600.2.p locus=Potri.013G005600 ID=Potri.013G005600.2.v4.1 annot-version=v4.1 ATGGGGCTCTCATTCACCAAACTTTTTAGCCGTCTGTTTGCCAAGAAAGAAATGCGAATTCTCATGGTGGGTCTTGACGCTGCTGGTAAGACCACCATCT TGTACAAGCTCAAGCTCGGAGAGATTGTCACCACCATTCCAACAATTGGGTTTAACGTGGAGACTGTGGAATACAAGAACATAAGCTTCACTGTCTGGGA TGTAGGTGGTCAGGACAAGATCCGACCATTGTGGAGGCATTATTTCCAAAACACTCAAGGGCTCATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTG GTTGAAGCTAGGGATGAGCTGCACCGGATGTTGAATGAGGATGAATTGAGGGATGCTGTGCTACTTGTGTTTGCAAACAAGCAAGATCTTCCAAATGCTA TGAATGCTGCTGAAATTACAGATAAGCTTGGTCTTCATTCACTCCGTCAACGCCACTGGTATATCCAGAGCACCTGTGCCACTTCTGGTGAAGGTCTCTA TGAGGGACTGGACTGGCTCTCCAACAACATTGCTAGCAAGGCTTAA
AA sequence Show only first row Show all	>Potri.013G005600.2 pacid=42811787 polypeptide=Potri.013G005600.2.p locus=Potri.013G005600 ID=Potri.013G005600.2.v4.1 annot-version=v4.1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV VEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	0	1
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Potri.013G005500 [exp]	2.00	0.8680
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007300 [exp]	4.58	0.8664
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	5.09	0.8311
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028100 [exp]	8.66	0.8767	ADF6,Pt-ADF.6
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.019G010400 [exp]	17.60	0.8455	PEAC14.4
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	18.97	0.8334
AT1G32050			SCAMP family protein (.1)		Potri.003G099300 [exp]	19.89	0.7969
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Potri.010G253500 [exp]	22.53	0.7536
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.008G130300 [exp]	25.09	0.7624
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Potri.013G088800 [exp]	25.49	0.7787

Compare expression of checked genes

Potri.013G005600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.