Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XTH3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25810 431 / 5e-153 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 419 / 1e-148 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57550 399 / 2e-140 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 396 / 9e-140 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57530 377 / 7e-132 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT2G18800 376 / 3e-131 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT5G57540 375 / 4e-131 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G14130 375 / 4e-131 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 374 / 1e-130 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G48070 369 / 7e-129 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007200 [exp] 466 / 6e-167 AT4G25810 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 459 / 3e-164 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 459 / 4e-164 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G071200 [exp] 426 / 4e-151 AT4G25810 379 / 3e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094800 [exp] 424 / 3e-150 AT4G25810 413 / 1e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G094900 [exp] 413 / 7e-146 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.002G060500 [exp] 411 / 3e-145 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 407 / 9e-144 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 404 / 2e-142 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030484 [exp] 389 / 2e-136 AT4G25810 398 / 9e-141 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Lus10000678 [exp] 385 / 4e-135 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 385 / 5e-135 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10008522 [exp] 381 / 3e-133 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 380 / 4e-133 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10004723 [exp] 378 / 6e-132 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 374 / 1e-130 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 373 / 3e-130 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010939 [exp] 372 / 7e-130 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 370 / 3e-129 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.013G005700.1 pacid=42812255 polypeptide=Potri.013G005700.1.p locus=Potri.013G005700 ID=Potri.013G005700.1.v4.1 annot-version=v4.1 ATGCACAACTCATCAGTTACCAAAACTCGTACTATAAATTCCCACCAAGACATGCACAATACACATCTCCTCACTTCCAAACAACTTGCTAAACTGCATT TCATTGTATCCATGGCTTTTCTGCTTGCTTCTTCAAGTGTTCCGATGTTATTAATGTTCTTGGTCTCTTTTACAGTCAGTTCTTTGATGGGGTCATCTCT TGGTAACTTCTACCAAAACTTTGATATTACATGGGGAGATGGCCGTGCTAAGATACTCAACAATGGTGAGCTTCTTACTCTCAATCTTGACAAAGCTTCT GGCTCAGGATTCCAATCCAAGAACGAGTATTTATTTGGAAAGATTGATATGCAACTCAAGCTTGTCCCTGGCAACTCCGCTGGCACTGTAACTGCCTATT ATTTGTCATCAAAAGGGTCAACATGGGATGAGATAGACTTCGAGTTCTTGGGGAACTTGAGTGGCGATCCTTACATTCTCCATACCAATGTGTTTAGCCA AGGCAAAGGCAACAGGGAGCAACAATTTTACCTCTGGTTTGATCCAACTACTGATTTCCACACCTACTCCATCCTCTGGAACCCACAAAGAATCATTTTC TCTGTAGATGGCACCCCTATTAGAGAATTCAAGAACATGGAATCAAGAGGTGTTCCATTCCCAAAGAATCAGCCAATGAGAATTTACTCTAGTTTATGGA ATGCAGATGACTGGGCTACAAGAGGTGGCTTAGTGAAGACTGATTGGTCAAAAGCTCCTTTCACTGCTTCTTATAAGAACTTCAATGCTAAGGATGCTTG TGTCTGGTCCAATGGTGCATCTTCTTGTGGTACAAATTCCTCTGCTGCTGCAGCCTCCTCCACCACCAACGCTTGGCTTTCAGAAGAGCTTGGTTCAACA AGTCAAGAGAGGCTAGAATGGGTCAAAAAAAACTACATGATATACAATTACTGCACAGACGCTAAGAGGTTTCCTCAAGGACTTCCTCCAGAATGCAGCG CTTCTTAA
AA sequence Show only first row Show all	>Potri.013G005700.1 pacid=42812255 polypeptide=Potri.013G005700.1.p locus=Potri.013G005700 ID=Potri.013G005700.1.v4.1 annot-version=v4.1 MHNSSVTKTRTINSHQDMHNTHLLTSKQLAKLHFIVSMAFLLASSSVPMLLMFLVSFTVSSLMGSSLGNFYQNFDITWGDGRAKILNNGELLTLNLDKAS GSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGSTWDEIDFEFLGNLSGDPYILHTNVFSQGKGNREQQFYLWFDPTTDFHTYSILWNPQRIIF SVDGTPIREFKNMESRGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTASYKNFNAKDACVWSNGASSCGTNSSAAAASSTTNAWLSEELGST SQERLEWVKKNYMIYNYCTDAKRFPQGLPPECSAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	0	1	Pt-XTH3.1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	1.00	0.8857	ATSEB1.1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	2.82	0.8397	GAE1.1
AT3G24630			unknown protein		Potri.018G082300 [exp]	3.16	0.8733
AT5G11070			unknown protein		Potri.006G259200 [exp]	4.58	0.8670
AT5G38700			unknown protein		Potri.002G198800 [exp]	5.29	0.8467
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	6.32	0.8346
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	6.40	0.7304
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	7.41	0.8570
AT3G17675			Cupredoxin superfamily protein...		Potri.013G030000 [exp]	8.24	0.7467
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	9.53	0.8103

Compare expression of checked genes

Potri.013G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.