Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09340 647 / 0 CSP41B, CRB, HIP1.3 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) AT3G63140 193 / 1e-57 CSP41A chloroplast stem-loop binding protein of 41 kDa (.1) AT1G75280 55 / 3e-08 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 53 / 1e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G14790 45 / 9e-05 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 44 / 0.0002 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G02000 42 / 0.0004 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 42 / 0.0007 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010266 [exp] 715 / 0 AT1G09340 652 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.002G053000 [exp] 202 / 4e-61 AT3G63140 594 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.005G209500 [exp] 201 / 8e-61 AT3G63140 597 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.018G101700 [exp] 46 / 2e-05 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.008G053100 [exp] 42 / 0.0006 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.016G080500 [exp] 42 / 0.0007 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031435 [exp] 635 / 0 AT1G09340 644 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10001525 [exp] 633 / 0 AT1G09340 638 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10014669 [exp] 210 / 3e-64 AT3G63140 592 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10006931 [exp] 207 / 4e-63 AT3G63140 582 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10005900 [exp] 47 / 2e-05 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10040847 [exp] 47 / 2e-05 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005450 [exp] 44 / 0.0001 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10015038 [exp] 42 / 0.0005 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10007355 [exp] 42 / 0.0005 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.013G006100.1 pacid=42812154 polypeptide=Potri.013G006100.1.p locus=Potri.013G006100 ID=Potri.013G006100.1.v4.1 annot-version=v4.1 ATGGCTAGGTTGGTGGCTGTGCAGCAGCAAACTCAGCCTTCTTTCTCTCTTCTTCCTTCCTCTCTCTCTGACTTCAATGGCACCAGACTCCACTCTCAAG TTCGGTGTAAGAGAAGGGTATGGCAGACAAAGGGAGCATTACAAGTTTCAGCATCAAGTTCCAAGAACATTCTTATAATGGGAGGCACTAGATTCATTGG TGTGTTCTTGTCTAGACTTCTTGTCAAAGAGGGTCATCAGGTGACCTTGTTTACCAGAGGTAAAGCACCAATTACTCAACCGTTGCCAGGTGAATCAGAC CAGGATTATGCTGATTTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGATTTTGAATTTGTGAAAACCAGTCTTGCTGCAAAAGGCTTTGATG TTGTCTATGACATAAATGGCCGCGAGGCAGTTGAAGTTGAACCTATACTGGATGCTCTACCAAAGCTAGAACAGTTCATATACTGCTCTTCAGCTGGAGT TTACCTCAAATCTGATCTTTTACCGCACAGCGAGAAAGATGCAGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTGAGACAGAGAGCTTACTAGAATCA AGGGGCGTCAACTGGACTTCTATAAGACCAGTCTACATCTATGGGCCCTTAAACTACAACCCTGTTGAAGAGTGGTTCTTTCATCGGTTGAAAGCAGGCC GCCCGATTCCAATTCCCAACTCAGGAATTCAAATGACTCAACTTGGTCATGTAAAGGATTTGGCAAAGGCTTTCATTCAGGTTCTTGGTAATGAAAAGGC CAGCCAGCAAGTATTTAACATATCAGGAGAGAAGTATGTCACCTTTGATGGATTAGCTAAGGCATGTGCGAAGGCTGCTGGGTTCCCAGAACCTGAGATT GTTCACTACAACCCTAAAGATTTTGACTTCGGGAAAAAGAAGGCGTTTCCATTCCGTGACCAGCATTTCTTTGCCTCGATTGACAAAGCAAAGCATGTTC TTGGATGGGAACCCGAATTCGACCTCGTGGAAGGTCTTGCAGATTCTTACAACCTTGACTTTGGCAGGGGAACATACAGGAAAGAGGCTGATTTTTTCAC CGATGACCTGATTATAGGCAAGAGCCTTGTTCTTCAGGCCTAG
AA sequence Show only first row Show all	>Potri.013G006100.1 pacid=42812154 polypeptide=Potri.013G006100.1.p locus=Potri.013G006100 ID=Potri.013G006100.1.v4.1 annot-version=v4.1 MARLVAVQQQTQPSFSLLPSSLSDFNGTRLHSQVRCKRRVWQTKGALQVSASSSKNILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQPLPGESD QDYADFSSKILHLKGDRKDFEFVKTSLAAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHSEKDAVDPKSRHKGKLETESLLES RGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQMTQLGHVKDLAKAFIQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAAGFPEPEI VHYNPKDFDFGKKKAFPFRDQHFFASIDKAKHVLGWEPEFDLVEGLADSYNLDFGRGTYRKEADFFTDDLIIGKSLVLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.013G006100 [exp]	0	1
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Potri.012G068500 [exp]	1.00	0.9854
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	2.00	0.9798	FBP.1
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Potri.004G217000 [exp]	3.46	0.9761	Pt-RPL9.3
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	4.24	0.9762	Pt-PPH1.1
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	5.47	0.9760
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Potri.016G096600 [exp]	6.48	0.9734
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Potri.008G195100 [exp]	7.74	0.9669	Pt-AGPL2.1
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Potri.015G097700 [exp]	8.94	0.9633
AT1G11860			Glycine cleavage T-protein fam...		Potri.011G006800 [exp]	10.09	0.9630	gdcT1,Pt-GDCST.1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	11.22	0.9625	Pt-PSBO.1

Compare expression of checked genes

Potri.013G006100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.