Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 331 / 1e-117 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010400 [exp] 355 / 4e-127 AT1G09330 328 / 2e-116 unknown protein Potri.002G191700 [exp] 242 / 8e-83 AT1G09330 240 / 6e-82 unknown protein Potri.014G116900 [exp] 162 / 2e-51 AT1G09330 158 / 1e-49 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031433 [exp] 330 / 6e-117 AT1G09330 315 / 6e-111 unknown protein Lus10010898 [exp] 326 / 1e-115 AT1G09330 313 / 2e-110 unknown protein Lus10010063 [exp] 293 / 1e-102 AT1G09330 308 / 1e-108 unknown protein Lus10004514 [exp] 248 / 2e-84 AT1G09330 269 / 2e-92 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [poplar] [flax] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Potri.013G006250.1 pacid=42811388 polypeptide=Potri.013G006250.1.p locus=Potri.013G006250 ID=Potri.013G006250.1.v4.1 annot-version=v4.1 ATGGATCCTATCCAGCCCCCTGTTGAAAATTATGCCAATCCAAAGACATGTTTCTTTCATGTTCTCTTTAAGGCTGGAGCTTTGGCATTTTACATACTTT CTACTCTGTTTTTTAATAGCTTTGTCATCATTTTTGTGGTGACTGTGCTTCTTGCTGCTCTTGATTTTTGGGTGGTTAAGAATGTGAGCGGTCGGATTCT AGTTGGCCTTAGGTGGTGGAATGAGATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAATCCCTCGACCAAGAGTCATTGGCCCGGATGAACAAGAAA GACTCGTGGCTGTTCTGGTGGACTCTTTACCTTGCAGCAGCTGCCTGGATTGTGCTTGGAATTTTCTCTCTCATAAGGTTCGAACCAGATTACTGCCTCA TTGTTGGAGTATGCTTGACTCTCAGCATTGCAAACATTGTTGGCTTCACCAAATGTCGCAAAGATGCCAAGAAGCAGTTCCAGCAGTTCGCAACCCAGAC CATTGCATCTCGAGTCTCATCTACCATACAGTCAGCATTCAGTGTTGTATGA
AA sequence Show only first row Show all	>Potri.013G006250.1 pacid=42811388 polypeptide=Potri.013G006250.1.p locus=Potri.013G006250 ID=Potri.013G006250.1.v4.1 annot-version=v4.1 MDPIQPPVENYANPKTCFFHVLFKAGALAFYILSTLFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKK DSWLFWWTLYLAAAAWIVLGIFSLIRFEPDYCLIVGVCLTLSIANIVGFTKCRKDAKKQFQQFATQTIASRVSSTIQSAFSVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.013G006250 [exp]	0	1
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Potri.014G141700 [exp]	2.00	0.9306	Pt-ARPC1.1
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	2.44	0.9297
AT5G49540			Rab5-interacting family protei...		Potri.010G148600 [exp]	2.82	0.9212
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.008G040300 [exp]	4.24	0.9188	Pt-VMA10.1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	4.35	0.8989	SYP61.1
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	6.00	0.9295	NAP4.2
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	6.92	0.9056
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.015G072100 [exp]	7.48	0.9156
AT4G25600			Oxoglutarate/iron-dependent ox...		Potri.012G142800 [exp]	7.74	0.9143
AT4G34660			SH3 domain-containing protein ...		Potri.004G161300 [exp]	7.93	0.8923

Compare expression of checked genes

Potri.013G006250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.