Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56590 712 / 0 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) AT1G60780 169 / 6e-48 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 162 / 2e-45 Clathrin adaptor complexes medium subunit family protein (.1) AT4G24550 143 / 1e-38 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT5G46630 140 / 3e-37 Clathrin adaptor complexes medium subunit family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010600 [exp] 828 / 0 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.010G044700 [exp] 171 / 9e-49 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 170 / 2e-48 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 141 / 1e-37 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 139 / 9e-37 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G105100 [exp] 132 / 5e-34 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031432 [exp] 767 / 0 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Lus10010899 [exp] 766 / 0 AT1G56590 704 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 172 / 6e-49 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10004626 [exp] 167 / 4e-47 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 159 / 3e-44 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 161 / 4e-43 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10040086 [exp] 142 / 5e-38 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10000107 [exp] 139 / 1e-37 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10024548 [exp] 134 / 1e-34 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 131 / 1e-33 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [poplar] [flax] Cargo_bd_muHD PF00928 [poplar] [flax] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Potri.013G006400.1 pacid=42811870 polypeptide=Potri.013G006400.1.p locus=Potri.013G006400 ID=Potri.013G006400.1.v4.1 annot-version=v4.1 ATGTTGCAGTGTATATTTATTCTTTCAGATTCCGGGGAGGTAATGCTAGAGAAACAGCTAATTGGGCATAAAGTAGATAGATCCATTTGTGCTTGGTTTT GGGATCAAGTCATTTCTCAAGGTGATTCCTTTAAGCAACAATCAGTTATTGCATCACCGACGCATTACTTGTTCCAAATTGTCCGGGAGGGAATCACTTT CTTAGCTTGCACTCAACTTGAAATGCCACCTTTGATGGGCATTGAGTTTCTTTGCAGAGTAGCTGATGTCCTCTCAGATTACCTTGAAGGGTTGAATGAA GATGTGATAAAGGATAACTTTGTCATTGTGTATGAGCTTTTGGACGAGATGATAGACAATGGCTTCCCCCTGACCACAGAACCTAATATCCTGAGGGAGA TGATAGCTCCACCAAATATTGTGAGCAAAATGCTGAGTGTTGTGACTGGTAACAGTTCAAATGTGAGCGACACTCTTCCAGGTGCAACAGCATCTTGTGT TCCGTGGAGAACAACAGACATAAAATATGCTAACAATGAAGTTTACGTTGATCTTGTTGAAGAAATGGATGCAATTATAAATAGGGACGGGGTCTTGGTA AAGTGTGAGATTTATGGTGAAGTTCAAGTAAACTCCCATATCACAGGTGTTCCTGAATTGACTCTGTCATTTGCAAACCCATCTATTATGGACGATGTCA GATTTCATCCCTGTGTTCGGTTTCGACCATGGGAATCCCATCATATCCTATCATTTGTGCCTCCTGATGGACTGTTTAAGCTCATGAGTTACAGGGTTAA AAAGTTGAAAAGTACCCCGATATATGTAAAGCCACAGATTACATCTGATGCTGGGACATGCCGCATCAATGTGATGGTTGGAATACGAAATGACCCTGGA AAGATGGTTGACTCAATAACAGTGCAATTTCAACTGCCTTCATGTGTTTTATCAGCTGACGTGACTGCAAATCATGGAGCAGTGACCGTCTTCACAAACA AGATGTGCAATTGGTCAATTGATCGAATACCGAAAGATAGAGCCCCTGCATTGTCTGGAACACTCATGCTTGAGACAGGATTAGAGCGCCTTCATGTATT TCCCACATTTCGAGTGGGTTTTAGGATCCAGGGTGTTGCCCTTTCTGGCCTGCAATTAGATAAACTGGATCTCAGGGTTGTACCAAGTCGTCTTTATAAA GGCTTTCGAGCTCTCACAAGATCAGGACTATATGAAGTGAGGTCATAG
AA sequence Show only first row Show all	>Potri.013G006400.1 pacid=42811870 polypeptide=Potri.013G006400.1.p locus=Potri.013G006400 ID=Potri.013G006400.1.v4.1 annot-version=v4.1 MLQCIFILSDSGEVMLEKQLIGHKVDRSICAWFWDQVISQGDSFKQQSVIASPTHYLFQIVREGITFLACTQLEMPPLMGIEFLCRVADVLSDYLEGLNE DVIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDTLPGATASCVPWRTTDIKYANNEVYVDLVEEMDAIINRDGVLV KCEIYGEVQVNSHITGVPELTLSFANPSIMDDVRFHPCVRFRPWESHHILSFVPPDGLFKLMSYRVKKLKSTPIYVKPQITSDAGTCRINVMVGIRNDPG KMVDSITVQFQLPSCVLSADVTANHGAVTVFTNKMCNWSIDRIPKDRAPALSGTLMLETGLERLHVFPTFRVGFRIQGVALSGLQLDKLDLRVVPSRLYK GFRALTRSGLYEVRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	0	1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	1.73	0.8436
AT1G77420			alpha/beta-Hydrolases superfam...		Potri.010G124000 [exp]	13.63	0.7412
AT5G57460			unknown protein		Potri.006G168200 [exp]	15.19	0.7988
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	17.43	0.7862
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	17.83	0.8170
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	18.86	0.8187	Pt-SEC22.1
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	20.14	0.7662
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	23.62	0.8090
AT1G55340			Protein of unknown function (D...		Potri.001G004000 [exp]	24.49	0.7499
AT5G40440		ATMKK3	mitogen-activated protein kina...		Potri.001G345500 [exp]	24.79	0.6903

Compare expression of checked genes

Potri.013G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.