Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15510 306 / 4e-105 Photosystem II reaction center PsbP family protein (.1.2.3) AT3G55330 44 / 6e-05 PPL1 PsbP-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010700 [exp] 460 / 3e-166 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.010G210200 [exp] 54 / 2e-08 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000614 [exp] 326 / 5e-113 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10000352 [exp] 323 / 4e-112 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10030326 [exp] 55 / 1e-08 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 52 / 1e-07 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10040314 [exp] 41 / 0.0004 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10023436 [exp] 41 / 0.0005 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.013G006500.1 pacid=42811809 polypeptide=Potri.013G006500.1.p locus=Potri.013G006500 ID=Potri.013G006500.1.v4.1 annot-version=v4.1 ATGGCAAGAATTCTTGACTCGTTTCCTCCTCCAACCCAACTCACCCACCCTACTCGTTCTCGTCCTACTTGGCTCAGTTGCTCAATGCCCATCTCGCCAA ATTCCACTTGCTTCAGCTCCATTCCTCACAACAAACAACTGACTAAAGCTTTTGCAGTTCCGAGGAGAAATGCAATGGCATTGATCTTGTCAAGTTACAT TTTCTCAGAAGTTGGTTTCAACAATATTGCATTTGCTCAACGGTCTGTTGGGTTCAGGGAATACATTGATCAATTTGATGGGTATTCATTGAAGCACCCT CAGAATTGGATTCAAGTTCGAGGTGCAGGAGCTGATATATTCTTCAGGGATCCTTTTGTTCTTGATGAAAATCTCTCAGTGGAGTTGTCGTCTCCTTCGT CGTCAAATTACAAGAGTGTTGAAGACTTGGGTCCTCCAGAAGAAGCTGGAAAAAAAGTACTTAAGCAGTATTTGACTGAGTTCATGTCTACTAGACTTGG CGTCAGGCGTGAATCAAATATTATTTCAACATCCTCAAGAGTCGCAGATGATGGAAAGCTTTATTACCAAGTTGAGGTGAACATCAAGTCCTACGCAAAT AACAATGAACTGGCTGTTATGCCTCAAGAAAGAGTAGTTCGTTTGGAATGGAACCGGCGGTATATGTCAGTTCTTGGAGTTGAAAACAACAGACTGTATG AGCTAAGATTACAGACACCAGAAAATGTATTTGTCGAAGAGGAAAATGATCTTCGCCAAGTCATGGATTCCTTCAGAGTGAATAAAGTGACTGTTTGA
AA sequence Show only first row Show all	>Potri.013G006500.1 pacid=42811809 polypeptide=Potri.013G006500.1.p locus=Potri.013G006500 ID=Potri.013G006500.1.v4.1 annot-version=v4.1 MARILDSFPPPTQLTHPTRSRPTWLSCSMPISPNSTCFSSIPHNKQLTKAFAVPRRNAMALILSSYIFSEVGFNNIAFAQRSVGFREYIDQFDGYSLKHP QNWIQVRGAGADIFFRDPFVLDENLSVELSSPSSSNYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNIISTSSRVADDGKLYYQVEVNIKSYAN NNELAVMPQERVVRLEWNRRYMSVLGVENNRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15510			Photosystem II reaction center...		Potri.013G006500 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.012G105300 [exp]	1.00	0.9746
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.003G015200 [exp]	1.41	0.9661	Pt-PETF.4
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.001G403300 [exp]	1.73	0.9651	PORA.2
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057800 [exp]	4.00	0.9359	Pt-CCR.6
AT1G74070			Cyclophilin-like peptidyl-prol...		Potri.012G058700 [exp]	7.00	0.9488
AT5G42765			unknown protein		Potri.014G196800 [exp]	7.41	0.9515
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	9.59	0.9624	Pt-PSBQ2.2
AT5G02160			unknown protein		Potri.006G087701 [exp]	9.94	0.9449
AT2G36250		ATFTSZ2-1, FTSZ...	Tubulin/FtsZ family protein (....		Potri.004G203100 [exp]	10.29	0.9085	Pt-FTSZ2.1
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.017G017500 [exp]	12.64	0.9478

Compare expression of checked genes

Potri.013G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.