Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56570 733 / 0 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 393 / 5e-127 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 394 / 6e-127 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 389 / 1e-124 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 369 / 3e-118 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 363 / 7e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 367 / 1e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 364 / 1e-116 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G47840 362 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 364 / 5e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G010900 [exp] 985 / 0 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 410 / 4e-133 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 405 / 1e-131 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 401 / 3e-131 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 396 / 2e-127 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 397 / 4e-127 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G155000 [exp] 390 / 2e-126 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 390 / 2e-126 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 390 / 2e-126 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019891 [exp] 769 / 0 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014027 [exp] 447 / 6e-154 AT1G56570 399 / 1e-135 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 416 / 4e-135 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 394 / 4e-127 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 386 / 7e-123 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019098 [exp] 386 / 8e-123 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 374 / 2e-121 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 384 / 4e-121 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 380 / 4e-121 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 380 / 1e-120 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G006700.3 pacid=42811889 polypeptide=Potri.013G006700.3.p locus=Potri.013G006700 ID=Potri.013G006700.3.v4.1 annot-version=v4.1 ATGAGCACAAAAAGACTACTATCCGCCAATAACTTCCATCCTTTCCCACCCATGATGAAAAACTACCTACAGTGGGCCCAAAACACCCCGACCCAGAAAT CAGGTACACCTTTTAATGCAAAGGGTACCTCCATTTTAGCTACAGACCTCTTAAAATCATATTTTGAAAGAGGCCTAACTAGTCAAGCACGCAACTTGTT TGATGAAATGCCTGAGAGAGATGTTGTTGCATGGACGACGATGATTTCAGGGTACACGCATTGCAATGAATACACTCAAGCATGGAGTGTTTTTGTCGAT ATGGTTAAGAATGGAAATGACCCACCAAATGCGTTCACAATATCAAGCGTTCTGAAGGCTTGTAAAGGCATGAAGCGTGTTTTTTGTGGGCGTTTGGTCC ATGGATTGGCTATAAAAAGAAGGTTTATGGAGGGGTTTATTTATGTGGATAATGCTCTCATGGATATGTATGCTTCTTGTGGTGTAGGAATGAGGGATGC TTGTGTTGTTTTTCACGATATTAAAGAGAAGAATGTTGTGTCTTGGACTACCTTGATTGCTGGTTACACTCACAGAGGCAATGGCAATCGCGCACTTCAA ATTTTCCGGGAAATGCTACTGGACGGAGTAGCATTGAACCCACATAGCATTTCGATAGCTGTTAGAGCATGTGCCTCAATTGGCTCACAGAATTTTGGCA GACAAATACACACAGCGGTGATCAAACATGGGTTTGAATCCGATCTTCCTGTCACAAATTCTATACTTGATATGTATTGTAGGTGTGGATGTTTATCTGA GGCAAACAAGTATTTCAATGATATGACTGAAAAAGATTTGATCACATGGAATACATTAATAGCAGGGTATGAAAGATCGGATTCCATTGAGCCTTTCTTT ATATTTTCACAAATGGAGTCAGAAGGTTTTACTCCAAATTGCTTCACTTTTACCAGTCTAATAGCAACATGTGCGAATGTAGCAGCTTTGTGTTGTGGAC AGCAAGTTCATGGAGGAATTTTTCGCAGAGGGCTTGACAGAAACCTGGAATTGGCTAATGCCTTGATTGATATGTATGCAAAGTGTGGTAATATATTTGA TTCATGCAAAATATTTAGTGAAATGTCTTGTAGAAATTTGGTCTCTTGGACTTCTATGATGATTGGATATGGGGCTCATGGATACGGTAAAAAGGTTGTT GAGTTGTTTGATGAGATGGTCAAGTCAGGCATCAGACCTGATCAGGTAGTGTTTATGGCAGTTCTAAGTGCGTGCAGTCATGCTGGACTAGTTGATCAAG GCTTGAGGTACATCAACTGTATGATAAATGATTATCACATCAAGCCAAATCAGGAGATTTATGGCTGTGTTGTAGATTTGCTAGGGAGACCGGGGAGAGT GGAGGACGCCTATCAACTAATACGAAGCATGCCATTTATGGCTGATGAGTCTGTTTGGGGTGCACTTCTTGGTGCTTGCAAGGCACATAACTTTTCGAGG TTGGGGAAATTGGCAGCTAAGAAGGCATTGGCTTTGAGACCAAACATGGTAGAGACCTATGTGATGCTGTCAAATATTTATGCTGCAGAAGGCAAATGGG GAGAAGCTGCAAGAATGAGAAAGTTGATGAAGAGAGCAGGGTGTAGAAAAGTGGCTGGGAGGAGTTGGATTGAGGTACGAAACCAGGTTTACAGTTTTGT TGTTGGAAATAAGATGGGTTCTCATAAAGAGTGGGTTTATGAAGTTCTGGAATTACCTGTACAGCATATGAAAGAGGCTGGCTATGTGCCTGAAGTTGAT TGCTTAATACATGACCAAGAAGATGGCACTTGA
AA sequence Show only first row Show all	>Potri.013G006700.3 pacid=42811889 polypeptide=Potri.013G006700.3.p locus=Potri.013G006700 ID=Potri.013G006700.3.v4.1 annot-version=v4.1 MSTKRLLSANNFHPFPPMMKNYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVD MVKNGNDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQ IFREMLLDGVALNPHSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSDSIEPFF IFSQMESEGFTPNCFTFTSLIATCANVAALCCGQQVHGGIFRRGLDRNLELANALIDMYAKCGNIFDSCKIFSEMSCRNLVSWTSMMIGYGAHGYGKKVV ELFDEMVKSGIRPDQVVFMAVLSACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALLGACKAHNFSR LGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAARMRKLMKRAGCRKVAGRSWIEVRNQVYSFVVGNKMGSHKEWVYEVLELPVQHMKEAGYVPEVD CLIHDQEDGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	0	1
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	4.00	0.8196
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	4.47	0.8229
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	9.53	0.8060
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	10.95	0.7912
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	11.61	0.8107
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	12.36	0.8170
AT4G33170			Tetratricopeptide repeat (TPR)...		Potri.006G076100 [exp]	13.26	0.7820
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	15.00	0.7855
AT5G15340			Pentatricopeptide repeat (PPR)...		Potri.017G087600 [exp]	17.66	0.7691
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.001G102501 [exp]	17.88	0.7977

Compare expression of checked genes

Potri.013G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.